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Report for CCDS36759.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36759.1 Public Mus musculus 13 Foxd1 23 108 98 CCDS HistoryNCBI Gene:15229Re-query CCDS DB by CCDS ID:36759.1Re-query CCDS DB by GeneID:15229See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36759.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105098.5 ENSMUSP00000100725.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105098.5Link to Ensembl Protein Viewer:ENSMUSP00000100725.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105098Re-query CCDS DB by Protein ID:ENSMUSP00000100725
Original member Current member NCBI NM_008242.2 NP_032268.2 Accepted alive Link to Nucleotide Sequence:NM_008242.2Link to Protein Sequence:NP_032268.2Re-query CCDS DB by Nucleotide ID:NM_008242Re-query CCDS DB by Protein ID:NP_032268Link to BLAST:NP_032268.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032268.2 456 Q61345 456 100% 0 0

Chromosomal Locations for CCDS 36759.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 98354620 98355990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGACCCTGAGCACGGAGATGTCCGATGCCTCCGGCCTCGCGGAGGAGACAGACATCGACGTGGTGGGGG
AGGGCGAGGACGACGAGGAGGAGGAGGACGATGACGACGAGGGCGGCGGCGGCCGCGGCGGCGGCGGGTC
CCGGTTGCCGAGCTCGGCCCAGCGGCGGAGGCGCTCTTACGCCGGGGAGGACGATCTCGAGGACCTGGAG
GAGGAGGACGACGATGACCTGCTGCTGGCCTCCCGGCCCGCCGCGTCCCCCGCGCCTCCGGGTCCTGCGC
CCGCCCCGGGGACCGGGTCGGGCGGCTGCAGCGGCGCCGGAGCGGGAGGCGGCGCGGGAGGTGGTACGGG
CGCGGGCACGGGCGGGGGCGCTAAGAATCCGCTGGTGAAGCCGCCCTACTCGTACATCGCGCTCATCACC
ATGGCCATCCTGCAGAGCCCCAAGAAGCGCCTGACGCTCAGCGAGATCTGCGAGTTCATCAGCAGCCGCT
TCCCTTACTACCGGGAGAAGTTCCCCGCTTGGCAGAACAGCATCCGTCACAACCTGTCGCTCAACGACTG
CTTCGTCAAGATCCCGCGCGAACCGGGCAACCCGGGCAAGGGCAACTACTGGACGCTCGACCCGGAGTCC
GCAGATATGTTCGACAACGGCAGCTTCCTGCGGCGCCGCAAGCGCTTCAAGCGCCAGCCGCTACTCGCTC
CCCACGCGGCGGCCGAGGCGCTGCTGCTGCGCGGTGCGGGGCCGGCGGCGGGCGCAGGGGACCCGGGCGC
CGCGCTTTTCCCGCCGCCGCCGCCACCGCCCGCCTGCGGCTACGGAGCCTACGGCTGCGCCTACGGCCTG
CAGCTGCCACCCTGCGCGCCGCCCTCCGCGCTCTTCGCTGCCGCCGCCGCGGCAGCCGCCGCCGCCTTCC
ATCCGCACTCGCCCCCGCCGCCTCCTCCTCCTCCGCCGCCGCCTCCCGGTGCGGCCGCCGAGCTGGCGCG
GACCGCCTTCGGCTACCGGTCACACGCGCTGGCTGCCGCCCTGCCCGGCCCTTTGCAGGCGGCCGCAGTC
AAGGCGGGAGGCCCGGGCGCCGCAGCGCTCGCACGCTCGCCCTTCTCCATCGAGAGCCTCATCGGGCGCA
CTCGGGGTCCCGCGGCCGCCGGGGCGCACGTCTCGTCCGGGGCCGCCAGCGGGACCGCCCCGGGACCCGG
GGGCGGGGGTTGCGCAGTACAGGCGGCTGCTGGTCCCGCCGTCGCGCTCACCCGCTCGCTCGTGGTCGCC
GCCGCGGCCGCCGCCTCCTCCGTGTCCTCGTCCGCCGCGCTGGGGACTCTGCACCAAGGGACAGCGCTGT
CCAGTGTGGAGAACTTTACTGCTAGGATTTCCAATTGTTAG

Translation (456 aa):
MTLSTEMSDASGLAEETDIDVVGEGEDDEEEEDDDDEGGGGRGGGGSRLPSSAQRRRRSYAGEDDLEDLE
EEDDDDLLLASRPAASPAPPGPAPAPGTGSGGCSGAGAGGGAGGGTGAGTGGGAKNPLVKPPYSYIALIT
MAILQSPKKRLTLSEICEFISSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPES
ADMFDNGSFLRRRKRFKRQPLLAPHAAAEALLLRGAGPAAGAGDPGAALFPPPPPPPACGYGAYGCAYGL
QLPPCAPPSALFAAAAAAAAAAFHPHSPPPPPPPPPPPPGAAAELARTAFGYRSHALAAALPGPLQAAAV
KAGGPGAAALARSPFSIESLIGRTRGPAAAGAHVSSGAASGTAPGPGGGGCAVQAAAGPAVALTRSLVVA
AAAAASSVSSSAALGTLHQGTALSSVENFTARISNC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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