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Report for CCDS35716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35716.1 Public Mus musculus 1 Kdm5b 23 108 98 CCDS HistoryNCBI Gene:75605Re-query CCDS DB by CCDS ID:35716.1Re-query CCDS DB by GeneID:75605See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35716.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047714.13 ENSMUSP00000038138.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047714.13Link to Ensembl Protein Viewer:ENSMUSP00000038138.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047714Re-query CCDS DB by Protein ID:ENSMUSP00000038138
Original member Current member NCBI NM_152895.2 NP_690855.2 Accepted alive Link to Nucleotide Sequence:NM_152895.2Link to Protein Sequence:NP_690855.2Re-query CCDS DB by Nucleotide ID:NM_152895Re-query CCDS DB by Protein ID:NP_690855Link to BLAST:NP_690855.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690855.2 1544 Q80Y84-1 1544 100% 0 0

Chromosomal Locations for CCDS 35716.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 134560339 134560542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134585154 134585231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134587922 134588044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134588777 134588947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134593329 134593463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134595800 134595896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134597583 134597692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134599060 134599218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134600634 134600753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134602450 134602608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134604442 134604623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134605713 134605875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134607688 134607807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134608865 134609059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134613188 134613369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134613887 134614011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134615918 134616068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134616189 134616303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134617692 134618047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134619560 134619698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134620843 134621022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134621935 134622093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134624711 134625196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134627265 134627376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134628598 134628752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134630433 134630753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134631237 134631374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4635 nt):
ATGGAGCCGGCCACCACGCTGCCCCCAGGCCCGCGCCCGGCGCTGCCCCTCGGGGGCCCGGGCCCGCTGG
GAGAGTTCCTGCCTCCCCCCGAGTGTCCGGTCTTCGAGCCGAGCTGGGAAGAGTTCGCGGACCCCTTCGC
TTTCATCCACAAGATCCGGCCCATAGCCGAGCAGACTGGGATCTGTAAGGTGCGGCCGCCGCCGGATTGG
CAGCCACCATTCGCTTGTGATGTCGATAAACTTCATTTCACCCCGCGGATCCAGAGGCTGAATGAGCTGG
AGGCCCAAACACGTGTAAAATTGAATTTCCTGGACCAGATTGCAAAGTATTGGGAGCTACAAGGAAGTAC
TCTGAAGATTCCCCACGTGGAGAGAAAGATCTTAGACTTGTTCCAGCTAAATAAGTTAGTCGCAGAAGAA
GGTGGGTTTGCAGTTGTTTGCAAGGATAGAAAATGGACCAAAATTGCCACCAAGATGGGTTTTGCTCCTG
GTAAAGCTGTGGGCTCACATATCAGGGGACATTATGAGCGAATACTCAATCCATACAATTTGTTCCTGTC
TGGAGACAGTCTGAGGTGTCTTCAGAAGCCTAACCTGACCTCCGACACAAAGGACAAGGAGTACAAACCC
CATGATATTCCCCAGAGGCAGTCTGTGCAGCCCGCAGAAACCTGTCCTCCGGCCCGCCGAGCAAAGCGCA
TGAGAGCAGAGGCTATGAATATTAAAATTGAGCCAGAAGAGGCAACAGAAGCCAGGACTCATAATCTGAG
ACGCCGAATGGGTTGCACAACTCCAAAATGGGAAAATGAGAAAGAAATGAAAAGCACCATCAAGCAAGAG
CCCACTGAGAAGAAAGACTGCGAGTTAGAAAGTGAGAAGGAGAAGCCCAAGAGCCGGGCCAAGAAAACGG
CCACTGCGGTGGACCTGTATGTGTGCCTCTTATGTGGAAGTGGCAATGACGAGGACCGACTCCTACTGTG
TGACGGCTGTGATGACAGTTACCACACCTTCTGCCTGGTTCCCCCTCTCCATGACGTTCCCAAGGGAGAC
TGGAGGTGTCCTAAGTGTTTGGCTCAAGAATGTAATAAGCCACAAGAAGCTTTTGGTTTTGAACAAGCAG
CAAGGGACTATACACTTCGTACATTTGGAGAAATGGCAGATGCATTCAAATCTGATTACTTCAACATGCC
AGTCCATATGGTTCCCACAGAGCTGGTGGAGAAGGAGTTTTGGCGGCTCGTAAGCACTATTGAAGAAGAC
GTCACGGTGGAGTATGGAGCTGATATTGCTTCAAAAGAGTTTGGCAGTGGCTTTCCTGTTCGAGATGGGA
AAATCAAGATTTCTCCTGAGGAAGAGGAATACCTGGATAGTGGCTGGAATTTGAACAACATGCCAGTGAT
GGAGCAGTCTGTCCTTGCTCATATTACTGCTGATATATGTGGCATGAAACTCCCCTGGTTGTATGTGGGC
ATGTGCTTTTCTTCATTCTGTTGGCACATTGAAGACCACTGGAGCTATTCAATCAACTACCTACACTGGG
GTGAGCCAAAAACCTGGTATGGAGTTCCAGGCTACGCTGCTGAGCAGCTAGAAAACGTGATGAAGAAGCT
CGCTCCTGAGCTCTTTGTGTCCCAGCCGGACCTGCTCCACCAGCTGGTGACCATCATGAACCCCAACACT
CTGATGACTCATGAAGTGCCTGTTTATCGAACGAATCAGTGTGCTGGGGAGTTTGTAATTACGTTTCCAA
GAGCCTACCACAGTGGCTTCAACCAAGGTTTTAATTTTGCCGAGGCTGTTAACTTCTGCACTGTTGATTG
GCTGCCATTGGGCCGCCAGTGTGTGGAGCATTATCGCTTGCTGCACCGTTATTGTGTCTTTTCCCACGAT
GAAATGATATGCAAAATGGCTTCTAAGGCTGATGTATTAGACGTTGTGGTAGCGTCAACTGTTCAGAAGG
ACATGGCCATCATGATCGAGGACGAGAAAGCTTTAAGGGAAACTGTTCGGAAATTGGGAGTAATTGATTC
TGAAAGAATGGATTTTGAGCTGTTGCCAGATGATGAGCGGCAGTGTATAAAATGCAAAACTACATGCTTC
ATGTCTGCCATCTCCTGCTCTTGTAAACCTGGCCTACTTGTTTGCCTACATCATGTGAAAGAATTGTGTT
CTTGCCCCCCGTATAAGTATAACCTGCGGTATAGATACACTCTGGATGATCTCTATCCAATGATGAATGC
ATTAAAGCTTCGAGCAGAGTCTTACAATGAATGGGCCTTAAATGTGAATGAAGCCTTGGAAGCAAAGATC
AATAAGAAGAAAAGTCTTGTCAGCTTTAAAGCTTTGATTGAAGAATCAGAAATGAAAAAATTCCCAGACA
ATGATCTTTTGCGTCACCTTCGACTAGTCACGCAGGATGCAGAAAAGTGTGCCTCTGTTGCCCAGCAGTT
GCTTAATGGCAAAAGGCAAACAAGGTATCGATCTGGTGGAGGAAAGTCTCAGAATCAGCTGACGGTGAAT
GAACTTAGACAGTTTGTGACTCAGCTGTATGCTCTGCCGTGCGTCCTTAGTCAGACACCGTTGCTAAAGG
ATCTCTTGAATCGTGTGGAAGATTTCCAACAGCAAAGCCAAAAACTACTGTCTGAGGAAATGCCTAGCGC
TGCCGAGCTACAGGAGTTGCTGGATGTCAGCTTTGAATTTGATGTTGAGCTTCCACAGCTCACTGAGATG
CGCATTCGCTTAGAGCAGGCCCGCTGGCTGGAAGAGGTTCAGCAGGCTTGCCTGGACTCCAGCTCCCTTT
CTTTGGATGATATGAGACGACTCATAGACTTAGGGGTGGGGCTGGCTCCATATTCTGCTGTGGAGAAAGC
TATGGCCCGCCTGCAGGAGCTGCTAACAGTGTCAGAACACTGGGACGACAAAGCCAAGAGTCTCCTCAGA
GCAAGACCACGGCATTCTTTGAGTAGCCTTGCTACAGCAGTCAAAGAGATGGAGGAGATCCCCGCCTACC
TGCCCAATGGTACAGTCCTGAAGGATTCTGTGCAAAGAGCCAGAGACTGGGTTCAGGATGTGGATGCATT
GCAGGCAGGAGGACGTGTGCCAGTGTTAGAGACACTCATTGAACTTGTTGCAAGAGGCCGATCTATCCCA
GTACATCTCAATTCTTTACCAAGATTGGAAATGTTAGTAGCTGAAGTTCATGCATGGAAAGAATGTGCTG
CTAAAACATTCTTGCCTGAGAATTCTACATATTCTCTGTTAGAGGTTCTTTGCCCTCGGTGTGACATTGG
CCTTTTGGGGCTGAAAAGGAAACAGAGAAAGTTGAAGGAGCCCTTGCCGAGTGGAAAGAAGAGAAGCACC
AAGTTAGAGAGCCTGAGCGATCTGGAGAGGGCTCTGATGGAGAGCAAAGAGACTGCGGCAGCTATGGCAA
CTCTTGGGGAAGCTCGCCTACGAGAGATGGAAGCTTTGCAGTCTCTCAGATTTGCCAATGAAGAGAAATT
GCTGTCACCTGTCCAAGACTTAGAGATGAAAGTCTGCTTGTGTCAGAAGACTCCAGCCACTCCCATGATT
CAGTGTGAACTCTGCAGGGATGCTTTCCATACTAGTTGTGTGGCAGCACCCAGTATTTCACAAAGCTCCC
GAATCTGGCTTTGTCCTCACTGTCGGAGGTCAGAGAAGCCTCCATTAGAGAAAATTCTGCCTCTGCTGGC
CTCCCTACAGCGTATACGAGTTCGTCTTCCTGAAGGAGATGCACTCCGATACATGATTGAAAGAACCGTG
AACTGGCAACATAGAGCCCAGCAGCTGCTTTCTTCAGGGAATCTAAAACTTGTGCAAGACCAAGTGGGTT
CTGGACTGTTGTCTAGCAGATGGCCAGCCTCAGCAGGACAGGCATCAGCAACAGACAAGGTGTCTCAGCC
TCCTGGCACAACATCCTTTTCATTGCCCGATGACTGGGACAACAGAACCTCATATTTACACTCTCCCTTC
TCTACTGGACAGAGTTGTCTCCCCCTCCATGGTTTGAGTCCAGAAGTGAATGAATTGCTGATGGAAGCCC
AGCTGCTCCAGGTATCCCTTCCTGAAATTCAGGAGCTTTATCAGACTCTACTTACTAAGCCAAGCTCTGT
TCAGCAAGCTGACCGAAGTTCACCAGTTAGATCCAGCAGTGAGAAGAACGATTGCCTTCGAGGGAAACGA
GATGCAATCAACAGTCCTGAGAGGAAACTGAAAAGGCGCCCAGAAAGAGAAGGCCTTCCTAGCGAGCGGT
GGGATCGAGTTAAACACATGCGGACCCCCCAAAAGAAGAAAATCAAACTGAGTCACCCCAAGGACATGGA
CAGTTTCAAGTTAGAAAGAGAGCGTAGCTATGACTTAGTGCGTAATGCTGAAACTCATTCCCTGCCCTCA
GACACATCCTACTCCGAACAGGAGGACTCTGAGGATGAAGATGCCATCTGTCCAGCTGTGAGCTGCCTGC
AGCCAGAAGGAGATGAGGTGGACTGGGTCCAGTGTGATGGCAGCTGCAATCAGTGGTTTCACCAGGTCTG
TGTTGGTGTCTCTCCAGAGATGGCAGAGAAGGAAGACTACATCTGTGTGCGCTGTACTGGGAAGGACGCA
CCAAGCCGAAAGTAA

Translation (1544 aa):
MEPATTLPPGPRPALPLGGPGPLGEFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPPPDW
QPPFACDVDKLHFTPRIQRLNELEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEE
GGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSGDSLRCLQKPNLTSDTKDKEYKP
HDIPQRQSVQPAETCPPARRAKRMRAEAMNIKIEPEEATEARTHNLRRRMGCTTPKWENEKEMKSTIKQE
PTEKKDCELESEKEKPKSRAKKTATAVDLYVCLLCGSGNDEDRLLLCDGCDDSYHTFCLVPPLHDVPKGD
WRCPKCLAQECNKPQEAFGFEQAARDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEED
VTVEYGADIASKEFGSGFPVRDGKIKISPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGMKLPWLYVG
MCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLENVMKKLAPELFVSQPDLLHQLVTIMNPNT
LMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCVEHYRLLHRYCVFSHD
EMICKMASKADVLDVVVASTVQKDMAIMIEDEKALRETVRKLGVIDSERMDFELLPDDERQCIKCKTTCF
MSAISCSCKPGLLVCLHHVKELCSCPPYKYNLRYRYTLDDLYPMMNALKLRAESYNEWALNVNEALEAKI
NKKKSLVSFKALIEESEMKKFPDNDLLRHLRLVTQDAEKCASVAQQLLNGKRQTRYRSGGGKSQNQLTVN
ELRQFVTQLYALPCVLSQTPLLKDLLNRVEDFQQQSQKLLSEEMPSAAELQELLDVSFEFDVELPQLTEM
RIRLEQARWLEEVQQACLDSSSLSLDDMRRLIDLGVGLAPYSAVEKAMARLQELLTVSEHWDDKAKSLLR
ARPRHSLSSLATAVKEMEEIPAYLPNGTVLKDSVQRARDWVQDVDALQAGGRVPVLETLIELVARGRSIP
VHLNSLPRLEMLVAEVHAWKECAAKTFLPENSTYSLLEVLCPRCDIGLLGLKRKQRKLKEPLPSGKKRST
KLESLSDLERALMESKETAAAMATLGEARLREMEALQSLRFANEEKLLSPVQDLEMKVCLCQKTPATPMI
QCELCRDAFHTSCVAAPSISQSSRIWLCPHCRRSEKPPLEKILPLLASLQRIRVRLPEGDALRYMIERTV
NWQHRAQQLLSSGNLKLVQDQVGSGLLSSRWPASAGQASATDKVSQPPGTTSFSLPDDWDNRTSYLHSPF
STGQSCLPLHGLSPEVNELLMEAQLLQVSLPEIQELYQTLLTKPSSVQQADRSSPVRSSSEKNDCLRGKR
DAINSPERKLKRRPEREGLPSERWDRVKHMRTPQKKKIKLSHPKDMDSFKLERERSYDLVRNAETHSLPS
DTSYSEQEDSEDEDAICPAVSCLQPEGDEVDWVQCDGSCNQWFHQVCVGVSPEMAEKEDYICVRCTGKDA
PSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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