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Report for CCDS30355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30355.1 Public Mus musculus X Pou3f4 21 106 86 CCDS HistoryNCBI Gene:18994Re-query CCDS DB by CCDS ID:30355.1Re-query CCDS DB by GeneID:18994See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30355.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000078229 ENSMUSP00000077354 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078229Link to Ensembl Protein Viewer:ENSMUSP00000077354Re-query CCDS DB by Nucleotide ID:ENSMUST00000078229Re-query CCDS DB by Protein ID:ENSMUSP00000077354
Original member Current member EBI,WTSI OTTMUST00000044372 OTTMUSP00000019934 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000044372Link to Vega Protein Viewer:OTTMUSP00000019934Re-query CCDS DB by Nucleotide ID:OTTMUST00000044372Re-query CCDS DB by Protein ID:OTTMUSP00000019934
Original member Current member NCBI NM_008901.2 NP_032927.1 Accepted alive Link to Nucleotide Sequence:NM_008901.2Link to Protein Sequence:NP_032927.1Re-query CCDS DB by Nucleotide ID:NM_008901Re-query CCDS DB by Protein ID:NP_032927Link to BLAST:NP_032927.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032927.1 361 P62515 361 100% 0 0

Chromosomal Locations for CCDS 30355.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 110814465 110815550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGGCCACAGCTGCCTCGAATCCCTACAGCATTCTCAGTTCCAGCTCCCTTGTCCATGCGGACTCCGCGG
GC
ATGCAGCAGGGAAGTCCTTTCCGCAATCCTCAGAAACTTCTCCAAAGTGACTACTTGCAGGGAGTTCC
C
AGCAATGGGCATCCCCTCGGGCATCACTGGGTGACCAGTCTTAGCGACGGGGGCCCGTGGTCCTCCACA
TTG
GCCACCAGCCCCCTGGACCAGCAAGACGTGAAGCCGGGACGCGAAGATCTGCAACTGGGCGCAATCA
TC
CATCACCGCTCGCCGCACGTAGCCCACCACTCGCCGCACACTAACCATCCGAACGCCTGGGGAGCGAG
C
CCTGCTCCAAACTCGTCCATCACGTCCAGCGGCCAACCCCTCAATGTGTACTCGCAGCCAGGCTTCACC
GTG
AGCGGTATGCTGGAGCACGGGGGACTCACTCCACCACCAGCTGCTGCCTCCACACAGAGCCTGCATC
CA
GTGCTCCGGGAGCCTCCAGACCATGGTGAGCTGGGCTCGCACCACTGCCAGGACCACTCTGATGAAGA
G
ACTCCAACCTCTGATGAGTTGGAACAGTTCGCCAAACAATTCAAACAAAGAAGAATCAAGTTGGGCTTC
ACG
CAAGCCGACGTGGGGCTGGCACTGGGCACACTGTATGGCAACGTGTTCTCGCAGACTACCATCTGCA
GG
TTCGAGGCCTTACAACTGAGCTTCAAGAACATGTGCAAGCTGAAACCGCTATTAAATAAGTGGCTGGA
G
GAGGCTGATTCATCCACAGGAAGCCCGACCAGCATTGACAAGATCGCTGCTCAAGGCCGCAAACGCAAG
AAG
CGAACCTCCATCGAGGTGAGTGTCAAGGGCGTACTGGAAACACATTTCCTCAAGTGTCCCAAGCCTG
CA
GCGCAGGAGATCTCCTCGCTGGCAGACAGTCTCCAGTTGGAGAAAGAAGTGGTGCGTGTCTGGTTCTG
T
AATAGAAGACAAAAAGAAAAAAGAATGACTCCGCCAGGGGATCAGCAGCCACACGAGGTTTATTCGCAC
ACG
GTGAAAACAGACGCGTCCTGCCACGATCTCTGA


Translation (361 aa):
MATAASNPYSILSSSSLVHADSAGMQQGSPFRNPQKLLQSDYLQGVPSNGHPLGHHWVTSLSDGGPWSST
L
ATSPLDQQDVKPGREDLQLGAIIHHRSPHVAHHSPHTNHPNAWGASPAPNSSITSSGQPLNVYSQPGFT
V
SGMLEHGGLTPPPAAASTQSLHPVLREPPDHGELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGF
T
QADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRK
K
RTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGDQQPHEVYSH
T
VKTDASCHDL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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