NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30022.1 Public Mus musculus X Bcor 23 108 98 CCDS HistoryNCBI Gene:71458Re-query CCDS DB by CCDS ID:30022.1Re-query CCDS DB by GeneID:71458See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30022.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043441.12 ENSMUSP00000048024.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043441.12Link to Ensembl Protein Viewer:ENSMUSP00000048024.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043441Re-query CCDS DB by Protein ID:ENSMUSP00000048024
Original member Current member EBI ENSMUST00000124033.7 ENSMUSP00000116258.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124033.7Link to Ensembl Protein Viewer:ENSMUSP00000116258.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124033Re-query CCDS DB by Protein ID:ENSMUSP00000116258
Original member Current member NCBI NM_001168321.1 NP_001161793.1 Accepted alive Link to Nucleotide Sequence:NM_001168321.1Link to Protein Sequence:NP_001161793.1Re-query CCDS DB by Nucleotide ID:NM_001168321Re-query CCDS DB by Protein ID:NP_001161793Link to BLAST:NP_001161793.1
Original member Current member NCBI NM_175046.3 NP_778211.2 Accepted alive Link to Nucleotide Sequence:NM_175046.3Link to Protein Sequence:NP_778211.2Re-query CCDS DB by Nucleotide ID:NM_175046Re-query CCDS DB by Protein ID:NP_778211Link to BLAST:NP_778211.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161793.1 1707 Q8CGN4-4 1707 100% 0 0
NP_778211.2 1707 Q8CGN4-4 1707 100% 0 0

Chromosomal Locations for CCDS 30022.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 12037626 12037917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12038912 12039068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12039250 12039327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12040385 12040530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12041502 12041668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12046856 12047113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12047423 12047748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12048303 12048545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12048995 12049252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12054969 12055155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12056344 12059190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12060130 12060208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12061522 12061607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5124 nt):
ATGCTTTCTGCAACCCCTCTGTATGGGAACGTTCACAGCTGGATGAACAGCGAGAGGGTCCGCATGTGTG
GAACAAGTGAAGACAGGAAAATTCCTGTGAATGATGGCGACGCTTCAAAAGCCAGGCTGGAGCTGAGGGA
GGAGACTCCCCTGAGTCACAGCGTGGTGGATACCAGTGGAGCCCATCGGATCGATGGCCTGGCAGCACTG
AGCATGGACCGCACAGGCCTCATCCGGGAAGGGCTCCGGGTCCCTGGAAACATCGTTTATTCTGGCTTGT
GTGGATTGGGCTCAGAAAAAGGTCGGGAGGCTACCCCAAGCTCTCTCAGTGGCCTTGGGTTTTCTTCGGA
AAGAAATCCAGAGATGCAATTCAAACCGAATACTCCCGAGACAGTGGAGGCTTCTGCTGTCTCTGGAAAA
CCCCCAAATGGCTTCAGTGCTATATACAAAACACCGCCTGGGATACAAAAGAGCGCTGTAGCTACAGCGG
AAAGCTTGGGTTTGGATAGGCCTGCCAGTGACAAACAGAGCCCTCTCAACATCAATGGTGCTAGTTACCT
GCGGCTGCCCTGGGTCAACCCTTACATGGAGGGGGCCACTCCAGCCATATACCCTTTCCTCGACTCGCCA
AATAAGTATTCACTGAATATGTACAAGGCCTTGCTACCTCAGCAGTCCTACGGCTTGGCCCAGCCACTGT
ATTCTCCTGTCTGCACCAGTGGGGAACGCTTCCTCTACCTGCCACCCCCACACTATGTCAACCCTCACAT
CCCCTCCTCCTTGGCTTCACCCATGAGGCTCTCCACACCTTCAGCCTCTGCGGCCATTCCACCTCTCGTC
CACTGCTCAGACAAAAGCCTCCCATGGAAGATGGGCGTCAACCCTGGGAACCCAGTAGATTCCCACAGTT
ACCCCCACATCCAAAACAGTAAACAGCCCCGGGTGACCTCTGCCAAGGCAGTCAATAGTGGCCTGCCAGG
GGACACAGCTCTCCTGTTGCCTCCTTCACCTCGGCCCTCAGCCCGGGTCCACCTTCCAACTCAGCCCGCT
GCAGAGACCTACTCCGAGTTCCACAAGCACTATCCCAGGATCTCCACCTCTCCCTCAGTCACCCTGACGA
AGCCATACATGACAGCCAATAGCGAGTTCTCTACATCCAGGCTGTCCAATGGCAAGTACCCCAAGGCTCT
AGATGGGGGCGACTGTGCTCAATCCATGCCTGGGCACACCCGGAAGACAACGGTTCAAGACAGAAAAGAT
GGGGGCTCACCACCTCTGTTGGAAAAGCAGACCGTTACCAAAGATGTCACAGACAAACCACTTGACCTGT
CTTCTAAAGTGGTGGATGCGGACGCTTCCAAAGGTGACCACATGAAAAAGATGGCTCCCACAGTCCTGGT
TCACAGTCGGGCTGCAAGTGGCTTAGTGCTCTCTGGAAGTGAGATTCCGAAAGAAACACTATCTCCTCCA
GGAAATGGATGTTCTATCTATAGATCAGAGATCATCAGCACTGCTCCCTCATCCTGGGTGGTGCCAGGGC
CAAGTCCTAATGAAGAGAACAATGGCAAAAGTCTGTCACTGAAAAACAAGGCTTTGGACTGGGCAATACC
GCAACAGCGGAGTTCCTCGTGTCCCCGCATGGGTGGCACAGATGCCGTGGTCACTAATGTTTCAGGGTCC
GTGTCCAGCTCAGGACGCCCAGCCTCTGCATCACCAGCCCCCAACGCCAACGCCAATGCAGATGGCACCA
AGACCAGCAGGAGCTCGGTGGATACCACGCCATCAGTCATCCAGCATGTGGGCCAGCCCTCATCCACGCC
TGCCAAGCACGGTGGCAGCACCAGCAGCAAGGGAGCCAAAGCCAACCCAGAACCGAGCTTCAAAGCGAGT
GAGAATGGCCTCCCGCCAACCTCAATATTTCTATCTCCAAATGAAGCATTCAGGTCCCCAGCAATTCCCT
ACCCTAGGAGTTACCTCCCTTACGCAGCACCAGAAGGCATCGCTCTAAGTCCCCTCTCTTTACATGGCAA
AGGACCTGTGTATCCTCACCCAGTTTTGTTACCCAATGGCAGTCTGTTTCCTGGGCACCTTGCCCCAAAG
CCTGGCCTGCCTTACGGGCTGCATACGAGCAGGCCAGAATTTGTGACCTACCAAGATGCCCTGGGCCTGG
GCATGGTCCATCCCATGTTGATCCCACACACGCCCATTGAGATCACAAAAGAGGAGAAGCCGGAGAGACG
CTCCCGCTCCCATGAGAGAGCCCGTTATGAGGACCCAACCCTCCGTAGCCGGTTTTCTGAGATGTTGGAA
GCTAGCAGCACCAAACTGCATCCAGAAGTCCCCACTGACAAGAACCTGAAGCCAAACTCTAGCTGGAATC
AAGGGAAGACTGGGGTCAAAAGCGACAAACTGGTCTACGTAGACCTTCTCCGAGAAGAAGCAGACACTAA
AACTGATGCAGGGGCACCCAAAGCAGGCCTTGTAGCCGAGAATGTAGGTCAGGACACCGAGGCCACCAAG
CCCTCAGCTGACCCTGTGATCCAACAACGCCGTGAATTCATCTCCCTCAGAGAGGAGCTGGGCCGAATCA
CTGACTTCCATGAATCTTTCACTTTCAAACAGGCCTCAAGCCAGCCAGTGTTCAGCTTAGGCAAGGATAG
TGGTGCAGCAGGAACCAACAAAGAGAACCTGGGTGTGCAGGTAGCAACTCCATTCTTGGAGACAGCTCTG
GGCAGTGAGGGCCCTGCTGTGACTTTTGGTAAAACCCAAGAGGATCCCAAACCATTTTGTGTGGGCGGTG
CCCCTCCAAACATGGATGTCACCCCCGCCTATACCAAAGAAGGAACTGATGAGGCCGAATCCAACGATGG
CAAAGTTCTGAAACCCAAGCCATCCAAGCTGGCAAAGAGAATTGCTAACTCGGCAGGTTATGTGGGCGAC
CGATTCAAGTGTGTCACCACCGAACTGTATGCAGATTCCAGTCAGCTCAGCCGAGAGCAGCGGGCATTGC
AGCGTGCAATGATGCGCTTCTCAGAGTTGGAGATGAAAGAGAGAGAAGGTAGCCACCCAGCAACCAAAGA
CTCCGAGGTGTGCAAATTCAGCCCAGCCGACTGGGAAAGGTTGAAAGGAAATCAGGAAAAGAAGCCAAAG
TCAGTCACCCTGGAAGAGGCCATTGCCGACCAGAATGACAGTGAGAGATGTGAGTATAGCACTGGAAACA
AACATGATCTCTTTGAAGCCCCAGAGGACAAAGATCTTCCTGTGGAAAAGTATTTCTTGGAGAGGCCACC
TGTGAGTGAGCCACCCAGTGACCAGGGGGTGGTGGACACGCCACACAGCCCCACCCTCCGGCTAGACAGG
AAACGCAAACTGTCAGGTGACAGCACCCACACTGAGACCGCTGTGGAAGAGCTAGCTGAGGACCCTCTGA
AAGCCAAGCGAAGACGGATCTCCAAAGGGCTCCATCCTAAAAAGCAACGCCACTTGCTGCACCTTAGAGA
ACGGTGGGAGCAGCAGGTGTCGGCAGCCGAGAGCAAACCTGGCCGGCAAAGCAGGAAGGAAGTGGCCCAG
GCTGTTCAGCCTGAGGTCACCTCCCAGGGGACTAACATCACTGAAGAGAAGCCTGGCAGGAAAAAGGCAG
AGGCCAAAGGCAACAGAGGCTGGTCTGAAGAGTCGCTCAAATCCTGTGACAATGAGCAAGGCTTGCCTGT
GCTCTCAGGCTCTCCGCCCATGAAGAGCCTTTCATCCACCAATGCAAGTGGCAAAAAGCAGACTCAGCCA
AGCTGCACGCCAGCCTCAAGGCTGCCTGCCAAACAGCAGAAAATTAAAGAAAGCCAGAAGACAGATGTGC
TGTGCACAGGGGAAGACGAGGATTGCCAGGCTGCCTCCCCGCTGCAAAAATACACAGACAACATCGAGAA
GCCATCCGGGAAGAGACTGTGCAAAACCAAGCACTTGATACCTCAGGAGTCCAGGAGGAGCTTGCAGATC
ACAGGCGACTACTATGTGGAGAACACTGACACTAAGATGACTGTGCGGAGATTCAGAAAACGACCTGAGC
CCAGTTCGGACTACGATTTGTCACCACCAGCCAAGCAGGAGCCAAAGCCCTTTGACCGTCTACAACAATT
GCTACCGGCCACCCAGGCCACCCAGCTGCCACGCTCAAATTCTCCTCAAGAGACCACCCAGTCTCGCCCC
ATGCCGCCAGAAGCTCGGAGACTTATTGTCAATAAGAATGCTGGCGAGACCCTCCTGCAGCGGGCTGCCC
GGCTAGGCTATGAGGAAGTGGTCTTATATTGCCTGGAGAACAAGGTCTGTGATGTCAATCATCGAGACAA
TGCTGGCTACTGTGCTCTGCATGAAGCTTGCGCCAGGGGATGGCTCAACATCGTGCGCCACCTCCTTGAA
TATGGCGCTGATGTCAACTGCAGTGCCCAGGATGGAACCAGGCCTCTGCATGATGCTGTGGAGAATGACC
ACTTAGAAATTGTACGATTGCTTCTTTCCTATGGTGCTGACCCTACTTTGGCCACATACTCAGGGAGAAC
CATCATGAAAATGACCCACAGTGAACTTATGGAGAAGTTTTTAACAGACTATTTAAATGACCTGCAGGGT
CGCAGTGAAGATGACACCAGCGGCGCTTGGGAGTTCTATGGCAGCTCTGTGTGTGAACCAGATGACGAAA
GTGGGTACGATGTTTTGGCTAATCCCCCAGGACCAGAAGACCCAGATGAGGAAGAGGATACCTATAGCGA
TTTGTTTGAGTTTGAGTTTGCTGAAAGCTCCCTCTTGCCGTGTTATAACATCCAAGTGTCTGTCGCTCAG
GGGCCACGAAACTGGCTTCTGCTCTCAGACGTGCTCAAGAAGTTGAAAATGTCCTCCCGGATATTCCGTA
GCAATTTTCCCAATCTGGAAATTGTCACCATTGCAGAGGCGGAGTTTTACCGACAGGTCTCAACAAGTCT
CTTGTTCTCCTGCCCCAAAGACCTGGAAGCCTTCAATCCTGAAAGCAAGGAGCTGTTGGATCTGGTGGAA
TTCACCAATGAGCTCCAGACACTGCTGGGCTCCTCTGTGGAGTGGCTCCACCCTAGTGACACGGGCCATG
AAAACTACTGGTGA

Translation (1707 aa):
MLSATPLYGNVHSWMNSERVRMCGTSEDRKIPVNDGDASKARLELREETPLSHSVVDTSGAHRIDGLAAL
SMDRTGLIREGLRVPGNIVYSGLCGLGSEKGREATPSSLSGLGFSSERNPEMQFKPNTPETVEASAVSGK
PPNGFSAIYKTPPGIQKSAVATAESLGLDRPASDKQSPLNINGASYLRLPWVNPYMEGATPAIYPFLDSP
NKYSLNMYKALLPQQSYGLAQPLYSPVCTSGERFLYLPPPHYVNPHIPSSLASPMRLSTPSASAAIPPLV
HCSDKSLPWKMGVNPGNPVDSHSYPHIQNSKQPRVTSAKAVNSGLPGDTALLLPPSPRPSARVHLPTQPA
AETYSEFHKHYPRISTSPSVTLTKPYMTANSEFSTSRLSNGKYPKALDGGDCAQSMPGHTRKTTVQDRKD
GGSPPLLEKQTVTKDVTDKPLDLSSKVVDADASKGDHMKKMAPTVLVHSRAASGLVLSGSEIPKETLSPP
GNGCSIYRSEIISTAPSSWVVPGPSPNEENNGKSLSLKNKALDWAIPQQRSSSCPRMGGTDAVVTNVSGS
VSSSGRPASASPAPNANANADGTKTSRSSVDTTPSVIQHVGQPSSTPAKHGGSTSSKGAKANPEPSFKAS
ENGLPPTSIFLSPNEAFRSPAIPYPRSYLPYAAPEGIALSPLSLHGKGPVYPHPVLLPNGSLFPGHLAPK
PGLPYGLHTSRPEFVTYQDALGLGMVHPMLIPHTPIEITKEEKPERRSRSHERARYEDPTLRSRFSEMLE
ASSTKLHPEVPTDKNLKPNSSWNQGKTGVKSDKLVYVDLLREEADTKTDAGAPKAGLVAENVGQDTEATK
PSADPVIQQRREFISLREELGRITDFHESFTFKQASSQPVFSLGKDSGAAGTNKENLGVQVATPFLETAL
GSEGPAVTFGKTQEDPKPFCVGGAPPNMDVTPAYTKEGTDEAESNDGKVLKPKPSKLAKRIANSAGYVGD
RFKCVTTELYADSSQLSREQRALQRAMMRFSELEMKEREGSHPATKDSEVCKFSPADWERLKGNQEKKPK
SVTLEEAIADQNDSERCEYSTGNKHDLFEAPEDKDLPVEKYFLERPPVSEPPSDQGVVDTPHSPTLRLDR
KRKLSGDSTHTETAVEELAEDPLKAKRRRISKGLHPKKQRHLLHLRERWEQQVSAAESKPGRQSRKEVAQ
AVQPEVTSQGTNITEEKPGRKKAEAKGNRGWSEESLKSCDNEQGLPVLSGSPPMKSLSSTNASGKKQTQP
SCTPASRLPAKQQKIKESQKTDVLCTGEDEDCQAASPLQKYTDNIEKPSGKRLCKTKHLIPQESRRSLQI
TGDYYVENTDTKMTVRRFRKRPEPSSDYDLSPPAKQEPKPFDRLQQLLPATQATQLPRSNSPQETTQSRP
MPPEARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKVCDVNHRDNAGYCALHEACARGWLNIVRHLLE
YGADVNCSAQDGTRPLHDAVENDHLEIVRLLLSYGADPTLATYSGRTIMKMTHSELMEKFLTDYLNDLQG
RSEDDTSGAWEFYGSSVCEPDDESGYDVLANPPGPEDPDEEEDTYSDLFEFEFAESSLLPCYNIQVSVAQ
GPRNWLLLSDVLKKLKMSSRIFRSNFPNLEIVTIAEAEFYRQVSTSLLFSCPKDLEAFNPESKELLDLVE
FTNELQTLLGSSVEWLHPSDTGHENYW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH