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Report for CCDS29993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29993.1 Public Mus musculus X Porcn 21 106 86 CCDS HistoryNCBI Gene:53627Re-query CCDS DB by CCDS ID:29993.1Re-query CCDS DB by GeneID:53627See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29993.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000082320 ENSMUSP00000080937 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082320Link to Ensembl Protein Viewer:ENSMUSP00000080937Re-query CCDS DB by Nucleotide ID:ENSMUST00000082320Re-query CCDS DB by Protein ID:ENSMUSP00000080937
Original member Current member EBI,WTSI OTTMUST00000043785 OTTMUSP00000019661 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000043785Link to Vega Protein Viewer:OTTMUSP00000019661Re-query CCDS DB by Nucleotide ID:OTTMUST00000043785Re-query CCDS DB by Protein ID:OTTMUSP00000019661
Original member Current member NCBI NM_145908.4 NP_665915.1 Accepted alive Link to Nucleotide Sequence:NM_145908.4Link to Protein Sequence:NP_665915.1Re-query CCDS DB by Nucleotide ID:NM_145908Re-query CCDS DB by Protein ID:NP_665915Link to BLink:NP_665915.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665915.1 456 Q9JJJ7-2 456 100% 0 0

Chromosomal Locations for CCDS 29993.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome XLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8194176 8194277 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 8197975 8198085 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 8199067 8199152 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 8199231 8199294 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 8199386 8199462 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 8201176 8201276 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 8201444 8201569 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 8203026 8203043 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 8203159 8203289 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 8203369 8203550 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 8203792 8203835 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 8204196 8204388 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 8205565 8205700 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGGCCACCTTCAGCCGCCAGGAATTTTTCCAGCAGCTACTGCAGGGCTGTCTCCTGCCTACTGTCCAAC
AG
GGCCTTGACCAGATCTGGCTGCTTCTTACCATCTGCTTCGCCTGCCGCCTCCTTTGGAGGCTGGGGTT
A
CCGTCTTACCTGAAGCATGCAAGCACCGTGGCAGGTGGCTTCTTCAGCCTCTACCACTTCTTCCAGCTG
CAC
ATGGTTTGGGTCGTGCTGCTGAGCCTCCTGTGCTACCTCGTGCTGTTCCTCTGCCGACACTCCTCCC
AC
CGAGGCGTCTTCCTCTCCGTCACCATCCTCATCTACCTGCTCATGGGTGAGATGCACATGGTGGACAC
C
GTGACATGGCACAAGATGCGAGGGGCCCAGATGATCGTGGCCATGAAGGCGGTGTCTCTGGGCTTCGAC
CTG
GACCGGGGCGAGGTGGGTGCAGTGCCCTCACCTGTGGAGTTCATGGGCTACCTCTACTTTGTGGGCA
CC
ATCGTCTTTGGGCCCTGGATATCCTTCCACAGCTACCTACAGGCTGTCCAAGGCCGCCCACTGAGCCG
C
CGATGGCTGAAGAAGGTGGCCCGGAGCCTGGCGCTGGCCCTGCTGTGCCTTGTACTGTCCACTTGTGTG
GGC
CCCTACCTCTTCCCCTACTTCATCCCCCTCGACGGTGACCGACTCCTTCGCAACAAGAAACGCAAAG
CC
AGGTGGCTACGAGCCTACGAGAGTGCTGTCTCCTTCCACTTCAGCAACTATTTTGTGGGCTTTCTGTC
T
GAGGCCACAGCCACATTGGCCGGGGCTGGCTTCACGGAGGAGAAGGACCACCTGGAATGGGACCTGACA
GTC
TCTAGACCGTTGAATGTGGAGCTGCCCCGGTCCATGGTGGAAGTTGTCACAAGCTGGAACCTGCCCA
TG
TCTTATTGGTTAAATAATTATGTTTTCAAAAATGCCCTTCGCCTGGGGACCTTCTCTGCTGTGCTGGT
C
ACCTATGCAGCCAGTGCCCTCCTGCATGGCTTCAGTTTCCACCTGGCTGCTGTGCTGCTGTCCCTGGCA
TTC
ATCACTTATGTGGAACATGTCCTCAGAAAGCGCCTGGCTCAGATCCTCAGTGCCTGCATCTTGTCAA
AG
CGTTGTCTGCCAGACTGTTCACATCGGCATCGCTTGGGCCTGGGGGTACGAGCCTTAAACTTGCTCTT
T
GGGGCCCTGGCTATCTTCCACCTGTCCTACCTGGGCTCCCTGTTTGATGTCGATGTGGACGACACCACA
GAG
GAGCAGGGCTACGGCATGGCATACACTGTCCACAAGTGGTCAGAGCTCAGCTGGGCCAGTCACTGGG
TC
ACTTTTGGATGCTGGATCTTCTACCGTCTCATAGGCTGA


Translation (456 aa):
MATFSRQEFFQQLLQGCLLPTVQQGLDQIWLLLTICFACRLLWRLGLPSYLKHASTVAGGFFSLYHFFQL
H
MVWVVLLSLLCYLVLFLCRHSSHRGVFLSVTILIYLLM
GEMHMVDTVTWHKMRGAQMIVAMKAVSLGFD
L
DRGEVGAVPSPVEFMGYLYFVGTIVFGPWISFHSYLQAVQGRPL
SRRWLKKVARSLALALLCLVLSTCV
G
PYLFPYFIPLDGDRLLR
NKKRKARWLRAYESAVSFHFSNYFVGFLSEATATLAGAGFTEEKDHLEWDLT
V
SRPLNVELPRSMVEVVTSWNLPMSYWLNN
YVFKNALRLGTFSAVLVTYAASALLHGFSFHLAAVLLSLA
F
ITYVEH
VLRKRLAQILSACILSKRCLPDCSHRHRLGLGVRALNLLFGALAIFHLSYLGSLFDVDVDDTT
E
EQ
GYGMAYTVHKWSELSWASHWVTFGCWIFYRLIG



Links Key
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