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Report for CCDS29963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29963.1 Public Mus musculus X Clcn5 21 106 86 CCDS HistoryNCBI Gene:12728Re-query CCDS DB by CCDS ID:29963.1Re-query CCDS DB by GeneID:12728See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29963.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000004428 ENSMUSP00000004428 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004428Link to Ensembl Protein Viewer:ENSMUSP00000004428Re-query CCDS DB by Nucleotide ID:ENSMUST00000004428Re-query CCDS DB by Protein ID:ENSMUSP00000004428
Original member Current member EBI,WTSI OTTMUST00000039773 OTTMUSP00000017743 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000039773Link to Vega Protein Viewer:OTTMUSP00000017743Re-query CCDS DB by Nucleotide ID:OTTMUST00000039773Re-query CCDS DB by Protein ID:OTTMUSP00000017743
Original member Current member NCBI NM_016691.4 NP_057900.3 Accepted alive Link to Nucleotide Sequence:NM_016691.4Link to Protein Sequence:NP_057900.3Re-query CCDS DB by Nucleotide ID:NM_016691Re-query CCDS DB by Protein ID:NP_057900Link to BLAST:NP_057900.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057900.3 746 Q9WVD4 746 100% 0 0

Chromosomal Locations for CCDS 29963.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome XLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7159729 7159819 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 7161236 7161452 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 7161598 7161996 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 7163330 7163516 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 7165580 7166122 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 7166356 7166436 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 7170309 7170515 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 7171144 7171266 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 7178301 7178488 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 7183791 7183890 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 7186184 7186288 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2241 nt):
ATGGACTTCTTGGAGGAGCCAATCCCTGGTGTAGGGACCTATGATGATTTCAACACAATTGATTGGGTGA
GA
GAGAAATCTCGAGACCGAGATAGGCACCGAGAGATTACCAATAAAAGCAAAGAGTCAACATGGGCCTT
A
ATTCACAGTGTGAGCGATGCTTTCTCTGGTTGGTTGTTAATGCTCCTTATTGGCCTTTTATCAGGTTCC
TTA
GCTGGCCTGATAGACATCTCTGCTCACTGGATGACAGACTTAAAAGAAGGGATATGTACAGGGGGGT
TC
TGGTTTAACCATGAGCACTGTTGCTGGAATTCTGAGCATGTTACCTTTGAACACAGAGACAAATGTCC
A
GAGTGGAATAGCTGGGCCCAGCTCATCATCAATACAGATCAGGGAGCCTTTGCCTACATAGTCAATTAC
TTC
ATGTACGTCCTCTGGGCTCTTCTGTTTGCTTTCCTTGCTGTATCTCTTGTCAAGGCATTTGCACCTT
AT
GCCTGTGGTTCTGGAATCCCTGAGATCAAAACCATCCTGAGTGGTTTCATTATTAGAGGCTATCTGGG
T
AAGTGGACCCTTGTCATCAAAACTATCACTTTGGTGTTGGCGGTGTCATCTGGCTTGAGCCTGGGCAAG
GAG
GGCCCCCTGGTGCACGTGGCTTGCTGCTGTGGGAACATCTTGTGCCACTGCTTCAACAAATACCGGA
AG
AATGAAGCCAAGCGGAGAGAGGTCTTATCAGCTGCAGCGGCTGCCGGTGTATCTGTAGCCTTTGGGGC
C
CCTATTGGTGGAGTATTATTCAGCCTGGAAGAGGTCAGCTACTACTTTCCCCTCAAAACACTATGGCGT
TCT
TTCTTCGCTGCTCTGGTGGCAGCGTTCACACTCCGCTCCATCAATCCATTCGGAAACAGCCGCTTAG
TT
CTGTTTTATGTGGAGTTCCACACCCCGTGGCATCTCTTTGAGCTCGTGCCATTCATTGTACTAGGCAT
A
TTCGGTGGCCTCTGGGGAGCTCTGTTTATCCGCACAAACATTGCCTGGTGTCGGAAGCGTAAAACCACA
CAG
TTGGGCAAGTATCCTGTCGTCGAGGTACTCATTGTGACGGCCATCACTGCCATCTTGGCTTTCCCCA
AT
GAATATACCCGGATGAGCACAAGTGAGCTCATTTCTGAGCTGTTCAATGACTGCGGCCTCCTGGACTC
C
TCCAAGCTCTGTGATTATGAGAACCACTTCAACACAAGCAAAGGCGGTGAGCTGCCTGACAGACCTGCT
GGC
GTGGGCATCTACAGTGCCATGTGGCAGCTGGCTCTGACACTCATACTGAAAATAGTCATTACTATAT
TC
ACCTTTGGCATGAAGATTCCTTCTGGTCTCTTTATCCCCAGCATGGCTGTCGGTGCTATAGCAGGCCG
T
CTTTTAGGAGTCGGAATGGAGCAACTGGCTTATTACCACCACGACTGGGGCATCTTCAATAGCTGGTGT
AGT
CAGGGAGCTGATTGTATCACCCCTGGCCTTTATGCCATGGTTGGGGCTGCTGCCTGCTTAGGTGGGG
TG
ACTCGGATGACTGTTTCTCTTGTTGTCATAATGTTTGAACTGACTGGTGGCCTGGAATATATTGTGCC
T
CTGATGGCTGCAGCTATGACAAGCAAGTGGGTGGCCGATGCTCTTGGGCGAGAGGGCATTTATGATGCC
CAC
ATCCGTCTCAATGGATACCCCTTTCTTGAAGCCAAAGAAGAATTTGCTCATAAGACTCTGGCAATGG
AT
GTGATGAAGCCCCGGAGAAATGACCCCTTGCTGACTGTCCTTACTCAGGACAGTATGACTGTGGAGGA
T
GTCGAGACCATAATCAGCGAAACCACGTACAGTGGCTTTCCGGTGGTAGTGTCCCGAGAGTCGCAAAGA
CTT
GTAGGCTTTGTTCTTCGAAGAGATCTCATTATTTCAATTGAAAATGCTCGGAAGAAACAGGACGGGG
TT
GTGAGCACTTCCATCATTTATTTCACGGAGCATTCGCCTCCAATGCCTCCATACACCCCACCTACCCT
G
AAGCTTCGGAACATCCTGGACCTCAGCCCCTTCACTGTGACAGACCTTACGCCAATGGAGATCGTGGTG
GAC
ATCTTCCGCAAGCTGGGCCTGCGCCAGTGCCTGGTTACACACAACGGGCGCTTACTTGGAATCATCA
CC
AAAAAGGATGTGTTAAAGCATATAGCACAGATGGCAAACCAAGACCCTGATTCCATTCTCTTCAACTA
G


Translation (746 aa):
MDFLEEPIPGVGTYDDFNTIDWVREKSRDRDRHREITNKSKESTWALIHSVSDAFSGWLLMLLIGLLSGS
L
AGLIDISAHWMTDLKEGICTGGFWFNHEHCCWNSEHVTFEHRDKCPEWNSWAQLIINTDQ
GAFAYIVNY
F
MYVLWALLFAFLAVSLVKAFAPYACGSGIPE
IKTILSGFIIRGYLGKWTLVIKTITLVLAVSSGLSLGK
E
GPLVHVACCCGNILCHCFNKYRKNEAKRRE
VLSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWR
S
FFAALVAAFTLRSINPFGNSRLVLFYVEFHTPWHLFELVPFIVLGIFGGLWGALFIRTNIAWCRKRKTT
Q
LGKYPVVEVLIVTAITAILAFPNEYTRMSTSELISELFNDCGLLDSSKLCDYENHFNTSKGGELPDRPA
G
VGIYSAMWQLALTLILKIVITIFTFGMK
IPSGLFIPSMAVGAIAGRLLGVGMEQLAYYHHDWGIFNSWC
S
QGADCITPGLYAMVGAAACL
GGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDA
H
IRLNGYPFLEAKEEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQR
L
VGFVLRRDLIISI
ENARKKQDGVVSTSIIYFTEHSPPMPPYTPPTLKLRNILDLSPFTVTDLTPMEIVV
D
IFRKLGLRQCLVTHN
GRLLGIITKKDVLKHIAQMANQDPDSILFN



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