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Report for CCDS29579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29579.1 Public Mus musculus 19 Cpsf7 23 108 98 CCDS HistoryNCBI Gene:269061Re-query CCDS DB by CCDS ID:29579.1Re-query CCDS DB by GeneID:269061See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29579.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038379.4 ENSMUSP00000038958.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038379.4Link to Ensembl Protein Viewer:ENSMUSP00000038958.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000038379Re-query CCDS DB by Protein ID:ENSMUSP00000038958
Original member Current member EBI ENSMUST00000237321.1 ENSMUSP00000157834.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237321.1Link to Ensembl Protein Viewer:ENSMUSP00000157834.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237321Re-query CCDS DB by Protein ID:ENSMUSP00000157834
Original member NCBI NM_172302.3 NP_758506.3 Updated not alive Link to Nucleotide Sequence:NM_172302.3Link to Protein Sequence:NP_758506.3Re-query CCDS DB by Nucleotide ID:NM_172302Re-query CCDS DB by Protein ID:NP_758506
Current member NCBI NM_172302.4 NP_758506.3 Accepted alive Link to Nucleotide Sequence:NM_172302.4Link to Protein Sequence:NP_758506.3Re-query CCDS DB by Nucleotide ID:NM_172302Re-query CCDS DB by Protein ID:NP_758506Link to BLAST:NP_758506.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758506.3 471 Q8BTV2-1 471 100% 0 0

Chromosomal Locations for CCDS 29579.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10526007 10526060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10531781 10531999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10532820 10532923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10533293 10533465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10535104 10535518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10536799 10536917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10539620 10539788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10540681 10540843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGTCAGAAGGAGTGGATTTGATTGATATATACGCTGATGAAGAGTTCAATCAGGACTCGGAGTTCAACA
ATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAG
TAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATT
CTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGGTGGACCA
CAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGA
GAATCGTGCAAATGGCCAGTCTAAAGGATATGCTGAGGTGGTGGTAGCCTCTGAAAATTCTGTCCACAAA
CTGCTGGAACTCTTACCAGGAAAAGTTCTTAATGGAGAAAAAGTAGATGTGAGGCCGGCCACCCGGCAGA
ACTTGTCACAGTTTGAGGCTCAGGCTCGGAAACGTGAGTGCGTCCGAGTCCCAAGAGGGGGAATACCTCC
ACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCC
TCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCC
TAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCC
TCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCT
CCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGG
GGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCAGCCGAGATTCAGGCCC
TCCACCTTCTACAGTGAGTGAAGCTGAATTTGAAGAGATAATGAAGCGAAACAGAGCAATTTCCAGCAGT
GCCATTTCCAAAGCAGTGTCTGGAGCTAGTGCAGGGGATTACAGTGACGCCATTGAGACACTACTCACAG
CCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAA
GGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTAGGAAAAGA
CATCGGTCCAGGGAGAGGTCACCCAGCCGGTCCCGGGAGAGTAGCAGGAGGCACCGAGACTTGCTTCATA
ACGAAGACCGGCATGATGATTATTTCCAAGAGAGGAACCGGGAACATGAGAGACACCGGGATAGAGAACG
GGACCGGCACCACTGA

Translation (471 aa):
MSEGVDLIDIYADEEFNQDSEFNNTDQIDLYDDVLTAASQPSDDRSSSTEPPPPVRQEPAPKPNNKTPAI
LYTYSGLRSRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHK
LLELLPGKVLNGEKVDVRPATRQNLSQFEAQARKRECVRVPRGGIPPRAHSRDSSDSADGRATPSENLVP
SSARVDKPPSVLPYFNRPPSALPLMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLAVP
PPGAIPPALHLNPAFFPPPNATVGPPPDTYMKASTPYNHHGSRDSGPPPSTVSEAEFEEIMKRNRAISSS
AISKAVSGASAGDYSDAIETLLTAIAVIKQSRVANDERCRVLISSLKDCLHGIEAKSYSVGASGSSSRKR
HRSRERSPSRSRESSRRHRDLLHNEDRHDDYFQERNREHERHRDRERDRHH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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