NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29572.1 Public Mus musculus 19 Fads1 23 108 98 CCDS HistoryNCBI Gene:76267Re-query CCDS DB by CCDS ID:29572.1Re-query CCDS DB by GeneID:76267See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010807.5 ENSMUSP00000010807.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010807.5Link to Ensembl Protein Viewer:ENSMUSP00000010807.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000010807Re-query CCDS DB by Protein ID:ENSMUSP00000010807
Original member Current member NCBI NM_146094.2 NP_666206.1 Accepted alive Link to Nucleotide Sequence:NM_146094.2Link to Protein Sequence:NP_666206.1Re-query CCDS DB by Nucleotide ID:NM_146094Re-query CCDS DB by Protein ID:NP_666206Link to BLAST:NP_666206.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666206.1 447 Q920L1 447 100% 0 0

Chromosomal Locations for CCDS 29572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10183052 10183264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10184927 10185037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10185685 10185882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10186378 10186479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10186755 10186883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10191440 10191500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10192912 10192988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10193701 10193798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10193996 10194092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10194318 10194397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10194489 10194614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10194871 10194922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGGCTCCCGACCCGGTGCCGACCCCTGGCCCGGCCTCCGCCCAGCTCCGCCAAACGCGCTACTTTACTT
GGGAGGAGGTGGCGCAGCGCTCCGGGCGGGAGAAGGAGCGATGGCTCGTGATCGACCGGAAGGTGTACAA
CATCAGCGACTTCAGCCGCCGCCACCCGGGGGGCTCCCGGGTCATCAGCCACTACGCGGGTCAGGATGCC
ACGGATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTG
GAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAATAAAGCGCTAACTGATGAATTCCGGGA
GCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTT
CACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCA
TCCTCTGTGCAGTACTGCTCAGTACAGTTCAGGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCT
GTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAGGGGGCC
CCCGCCAGCTGGTGGAACCACATGCATTTCCAGCACCATGCCAAGCCTAACTGCTTCCGCAAGGACCCCG
ATATCAACATGCACCCCCTCTTCTTCGCCCTGGGGAAGGTCCTTCCTGTGGAGCTCGGGAGGGAAAAGAA
GAAGCACATGCCATACAACCATCAGCACAAGTACTTCTTCCTCATCGGACCCCCAGCCTTGCTGCCTCTA
TACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTGGACTTGGCCTGGATGCTCA
GCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTT
CATTGTCAGGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATT
GATCACGACCGGAATGTGGACTGGGTCTCCACCCAGCTGCAGGCAACCTGCAACGTTCACCAATCAGCCT
TCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCACCTCTTCCCCACCATGCCGCGGCA
CAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAG
CCCCTGCTCACAGCCTTCGCGGACATTGTTTACTCCCTGAAGGAGTCAGGGCAACTCTGGTTGGACGCTT
ACCTTCACCAATAG

Translation (447 aa):
MAPDPVPTPGPASAQLRQTRYFTWEEVAQRSGREKERWLVIDRKVYNISDFSRRHPGGSRVISHYAGQDA
TDPFVAFHINKGLVRKYMNSLLIGELAPEQPSFEPTKNKALTDEFRELRATVERMGLMKANHLFFLVYLL
HILLLDVAAWLTLWIFGTSLVPFILCAVLLSTVQAQAGWLQHDFGHLSVFGTSTWNHLLHHFVIGHLKGA
PASWWNHMHFQHHAKPNCFRKDPDINMHPLFFALGKVLPVELGREKKKHMPYNHQHKYFFLIGPPALLPL
YFQWYIFYFVVQRKKWVDLAWMLSFYARIFFTYMPLLGLKGFLGLFFIVRFLESNWFVWVTQMNHIPMHI
DHDRNVDWVSTQLQATCNVHQSAFNNWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKYGIKYESK
PLLTAFADIVYSLKESGQLWLDAYLHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH