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Report for CCDS29497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29497.1 Public Mus musculus 19 Batf2 23 108 98 CCDS HistoryNCBI Gene:74481Re-query CCDS DB by CCDS ID:29497.1Re-query CCDS DB by GeneID:74481See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29497.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045042.7 ENSMUSP00000045744.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045042.7Link to Ensembl Protein Viewer:ENSMUSP00000045744.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045042Re-query CCDS DB by Protein ID:ENSMUSP00000045744
Original member Current member NCBI NM_028967.2 NP_083243.1 Accepted alive Link to Nucleotide Sequence:NM_028967.2Link to Protein Sequence:NP_083243.1Re-query CCDS DB by Nucleotide ID:NM_028967Re-query CCDS DB by Protein ID:NP_083243Link to BLAST:NP_083243.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083243.1 277 Q8R1H8-1 277 100% 0 0

Chromosomal Locations for CCDS 29497.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6164515 6164553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6166468 6166572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6171306 6171995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGCAACTCTGTGGGAGTAGCGAGCTGCTGACTGAGACAGACCTTGGGGAGTCTCAGAAACAGCTGAAGA
AGAAGCAGAAGAACCGAGTGGCTGCCCAGCGCAGCCGGCAGAAGCACACCAGTAAGGCGGACGCTCTGCA
CCAGCAGCACGAATCCTTGGAGAAACAGAACCACGCCCTTCGGAAGGAGATCCAGGCCTTGCAGACTGAG
CTGGCAGGGTGGGGCCGGACACTGCACTTGCATGAACGCCTGTGCAGAGTGGACTGTGATCCCTGCCCTG
TTCTGCTGCCCTCTGGATGCCCAATCCAGGCCAAGCAACCCTCAGGACAACCTGCCCCTCTTGGATACAA
TGGCTGCCAGGAACAACTGGGCCTGTTCCAGACTCCGGGCTCATCTCCCCGAGCCCAGCATCTCTCTCCA
GGTCCATGCTCTCATGAGTCTCCTGGCCTCCTCCCTTCCCTCCTGCCTTCACTGGCCTTTGACCCTCTCA
TGGTGAGGACACCTCTAGCCCAGCTCTCCCCCAGCCCTGTCCTGTCTGCATCATCACCTTCTGGTTCCAG
CCTGCTGGGGTCTTTCTCTAAGCTTGATCCCCTCATACCCAGCCCCCAAGACCAACTGGCCCCACCACAA
CCCCTCAGGCAGGAGCAGCCCACCAGTGGGAGGCTGGCATCCTCTGACTCTCCAGCTGCTCTGGGACCAG
AGTGTTCACAGAACAGAGAGCATTTGCCGGCACTGCCTGGCTCCTCCACTCATTGGCAGAAGTCATCTGT
GGCCCCTAGCCCACAGGCCCTCATGGCCTTCCCCCTGCTTTCTTCTGCAAAAGTCCACTTCTAG

Translation (277 aa):
MQLCGSSELLTETDLGESQKQLKKKQKNRVAAQRSRQKHTSKADALHQQHESLEKQNHALRKEIQALQTE
LAGWGRTLHLHERLCRVDCDPCPVLLPSGCPIQAKQPSGQPAPLGYNGCQEQLGLFQTPGSSPRAQHLSP
GPCSHESPGLLPSLLPSLAFDPLMVRTPLAQLSPSPVLSASSPSGSSLLGSFSKLDPLIPSPQDQLAPPQ
PLRQEQPTSGRLASSDSPAALGPECSQNREHLPALPGSSTHWQKSSVAPSPQALMAFPLLSSAKVHF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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