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Report for CCDS28650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28650.1 Public Mus musculus 17 Rnf5 23 108 98 CCDS HistoryNCBI Gene:54197Re-query CCDS DB by CCDS ID:28650.1Re-query CCDS DB by GeneID:54197See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28650.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015622.7 ENSMUSP00000015622.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015622.7Link to Ensembl Protein Viewer:ENSMUSP00000015622.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000015622Re-query CCDS DB by Protein ID:ENSMUSP00000015622
Original member Current member NCBI NM_019403.3 NP_062276.1 Accepted alive Link to Nucleotide Sequence:NM_019403.3Link to Protein Sequence:NP_062276.1Re-query CCDS DB by Nucleotide ID:NM_019403Re-query CCDS DB by Protein ID:NP_062276Link to BLAST:NP_062276.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062276.1 180 O35445 180 100% 0 0

Chromosomal Locations for CCDS 28650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34601569 34601666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34601741 34601858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34601934 34601988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34602085 34602197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34602291 34602309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34603334 34603473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGCAGCAGCGGAGGAAGAAGACGGGGGCCCCGAAGGGCCAAATCGCGAGCGGGGCGGGGCGAGCGCGA
CCTTCGAATGTAATATATGTCTGGAGACAGCTCGCGAAGCTGTGGTCAGCGTGTGTGGCCACCTGTATTG
TTGGCCCTGTCTTCACCAGTGGCTGGAGACCCGGCCAGACCGGCAAGAATGCCCGGTGTGTAAAGCTGGC
ATCAGCAGGGAGAAGGTCGTCCCTCTTTATGGGCGAGGGAGCCAGAAGCCACAGGATCCCAGATTGAAAA
CTCCACCCCGCCCTCAGGGCCAGCGACCAGCTCCAGAGAGCAGAGGGGGGTTCCAGCCATTTGGTGATGC
CGGGGGATTCCACTTCTCCTTTGGTGTCGGTGCCTTCCCCTTTGGCTTTTTCACCACCGTGTTCAATGCC
CATGAACCTTTCAGAAGAGGCGCAGGTGTGGATCTGGGACAGGGTCACCCAGCCTCCAGCTGGCAAGATT
CCCTATTCCTGTTCCTCGCCATCTTTTTCTTTTTCTGGCTGCTCAGTATTTGA

Translation (180 aa):
MAAAEEEDGGPEGPNRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAG
ISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDAGGFHFSFGVGAFPFGFFTTVFNA
HEPFRRGAGVDLGQGHPASSWQDSLFLFLAIFFFFWLLSI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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