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Report for CCDS28429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28429.1 Public Mus musculus 17 Vmn1r230 23 108 98 CCDS HistoryNCBI Gene:171231Re-query CCDS DB by CCDS ID:28429.1Re-query CCDS DB by GeneID:171231See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053974.1 ENSMUSP00000061330.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053974.1Link to Ensembl Protein Viewer:ENSMUSP00000061330.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000053974Re-query CCDS DB by Protein ID:ENSMUSP00000061330
Original member Current member EBI ENSMUST00000233939.1 ENSMUSP00000156540.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233939.1Link to Ensembl Protein Viewer:ENSMUSP00000156540.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233939Re-query CCDS DB by Protein ID:ENSMUSP00000156540
Original member Current member EBI ENSMUST00000232909.1 ENSMUSP00000156546.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232909.1Link to Ensembl Protein Viewer:ENSMUSP00000156546.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232909Re-query CCDS DB by Protein ID:ENSMUSP00000156546
Original member Current member EBI ENSMUST00000233670.1 ENSMUSP00000156842.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233670.1Link to Ensembl Protein Viewer:ENSMUSP00000156842.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233670Re-query CCDS DB by Protein ID:ENSMUSP00000156842
Original member Current member NCBI NM_134197.1 NP_598958.1 Accepted alive Link to Nucleotide Sequence:NM_134197.1Link to Protein Sequence:NP_598958.1Re-query CCDS DB by Nucleotide ID:NM_134197Re-query CCDS DB by Protein ID:NP_598958Link to BLAST:NP_598958.1

Chromosomal Locations for CCDS 28429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 20846551 20847501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGAGAAGTGTTTGGTGGCATATATTGAAGTCAGTTTTTCTCAGTCATAATATGGATGCCAGGAATTTGG
GAACAGGAATAATATATCTGTTACAGAGTACAGTTGGGATTCTAGGAAACACCTTTCTCCTTTCCTACTA
CTTGATTATTTATTATAAGAAACACAAACGAAAGCCCACAGATTTGATTATTATGCATCTGATCATAGTG
AATATCTTGATCATGCTCTCGAAAGGAATGTCTATCACAATGGGAGCTTTGGGGTTGAAACTTTTCTTTG
ATGATTGGAGCTATCAATTTTTTATGTATGTTTTAAGGGTTTTCAGGAGTATGTCCATTGTCACCATCTG
CCTCTTGAGTGTCTTCCAGACCATCACTATCATCCCAAGAAACTCCTGTTGGAAGAATATTAGAGTCAAA
TCTCCAAAGAATATTAGTCTCTGCATTTCTCTCTGCTGGGTCTTGTACATCTTCATAAATGTTATTTTCC
CTTTGTACATGTCCATAACATTTACTGGGAAAAACAAAACAAAGGATACAAATTTCAAACTCTATACTAT
TGTAGGATATGACAAAAACACAGTTTCCTTATATATAACTTTCTTTGTGTTTCCTGAAATTCTGTTCTCT
GGTCTCATCACCTGGTCAGGTAGCTCAGTGATTGTCATTCTGTATAGGCACAAACAGCAAGTTCAATACG
TCCGCAGTACTCATGCTTCCCCTAGCAGCACCCCTGAATCCAGAGCCATTCAGAGCATCCTGGTCCTAGT
TTCCATCTTTATGGCTTTTTATACACTCTCTGCCATCTTACATGCTTACAATGCTCTATTTCACAGTTCA
AATTGGTGGCTAATGACTTTCGCAAACATTATATCTTTATGTATTCCCACTTCAATCCCTTTTGTACTTA
TGAGTCAATCATCCCCTCTCTCCAAACTCTGCTTCCTCTAG

Translation (316 aa):
MRSVWWHILKSVFLSHNMDARNLGTGIIYLLQSTVGILGNTFLLSYYLIIYYKKHKRKPTDLIIMHLIIV
NILIMLSKGMSITMGALGLKLFFDDWSYQFFMYVLRVFRSMSIVTICLLSVFQTITIIPRNSCWKNIRVK
SPKNISLCISLCWVLYIFINVIFPLYMSITFTGKNKTKDTNFKLYTIVGYDKNTVSLYITFFVFPEILFS
GLITWSGSSVIVILYRHKQQVQYVRSTHASPSSTPESRAIQSILVLVSIFMAFYTLSAILHAYNALFHSS
NWWLMTFANIISLCIPTSIPFVLMSQSSPLSKLCFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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