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Report for CCDS26953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26953.1 Public Mus musculus 14 Ghitm 23 108 98 CCDS HistoryNCBI Gene:66092Re-query CCDS DB by CCDS ID:26953.1Re-query CCDS DB by GeneID:66092See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26953.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042564.16 ENSMUSP00000046212.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042564.16Link to Ensembl Protein Viewer:ENSMUSP00000046212.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000042564Re-query CCDS DB by Protein ID:ENSMUSP00000046212
Original member Current member EBI ENSMUST00000165649.3 ENSMUSP00000129712.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165649.3Link to Ensembl Protein Viewer:ENSMUSP00000129712.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000165649Re-query CCDS DB by Protein ID:ENSMUSP00000129712
Original member Current member NCBI NM_001199122.1 NP_001186051.1 Accepted alive Link to Nucleotide Sequence:NM_001199122.1Link to Protein Sequence:NP_001186051.1Re-query CCDS DB by Nucleotide ID:NM_001199122Re-query CCDS DB by Protein ID:NP_001186051Link to BLAST:NP_001186051.1
Original member Current member NCBI NM_001359902.1 NP_001346831.1 Accepted alive Link to Nucleotide Sequence:NM_001359902.1Link to Protein Sequence:NP_001346831.1Re-query CCDS DB by Nucleotide ID:NM_001359902Re-query CCDS DB by Protein ID:NP_001346831Link to BLAST:NP_001346831.1
Original member Current member NCBI NM_078478.5 NP_510963.1 Accepted alive Link to Nucleotide Sequence:NM_078478.5Link to Protein Sequence:NP_510963.1Re-query CCDS DB by Nucleotide ID:NM_078478Re-query CCDS DB by Protein ID:NP_510963Link to BLAST:NP_510963.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186051.1 346 Q91VC9 346 100% 0 0
NP_001346831.1 346 Q91VC9 346 100% 0 0
NP_510963.1 346 Q91VC9 346 100% 0 0

Chromosomal Locations for CCDS 26953.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 37122142 37122226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 37125160 37125331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 37125902 37126090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 37127587 37127695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 37130636 37130777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 37131538 37131649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 37133171 37133270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 37133633 37133764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGTTGGCTGCAAGGCTTGTGTGTCTCCGGACACTACCTTCCAGGGTTTTCCAGCCCACTTTCATCACCA
AGGCCTCTCCACTTGTGAAGAATTCCATCACAAAGAACCAATGGCTCGTAACACCCAGCAGGGAATATGC
TACCAAGACAAGAATTAGGACTCACCGTGGGAAAACTGGACAAGAACTGAAAGAGGCAGCCTTGGAACCA
TCAATGGAAAAAATCTTTAAAATCGATCAAATGGGAAGGTGGTTTGTTGCTGGAGGAGCAGCTGTTGGTC
TTGGAGCGCTCTGCTACTATGGCTTGGGAATGTCTAATGAGATTGGAGCTATCGAAAAGGCTGTAATTTG
GCCTCAGTATGTAAAGGATAGAATTCATTCTACTTACATGTACTTAGCAGGAAGTATTGGTTTAACAGCT
TTGTCTGCCTTGGCAGTAGCCAGAACACCTGCTCTCATGAACTTCATGATGACAGGCTCTTGGGTGACAA
TTGGTGCGACCTTTGCAGCCATGATTGGAGCTGGAATGCTTGTACACTCAATATCATATGAGCAGAGCCC
AGGCCCAAAGCATCTGGCTTGGATGCTGCATTCTGGTGTGATGGGTGCAGTTGTGGCTCCTCTGACGATC
TTAGGGGGGCCTCTTCTCCTGAGAGCCGCATGGTACACCGCTGGTATTGTGGGAGGCCTCTCTACTGTGG
CCATGTGTGCGCCTAGTGAGAAGTTTCTGAACATGGGAGCACCCCTGGGAGTGGGCCTGGGTCTTGTCTT
TGCGTCTTCTCTGGGGTCTATGTTTCTTCCCCCTACCTCTGTGGCTGGTGCCACTCTGTACTCAGTGGCA
ATGTATGGTGGATTAGTTCTTTTCAGCATGTTCCTTCTGTATGATACTCAGAAAGTAATCAAACGTGCAG
AAATAACACCCATGTATGGAGCTCAAAAGTATGATCCCATCAATTCGATGTTGACAATCTACATGGATAC
ATTAAATATATTTATGCGAGTTGCAACTATGCTAGCAACTGGAAGCAACAGAAAGAAATGA

Translation (346 aa):
MLAARLVCLRTLPSRVFQPTFITKASPLVKNSITKNQWLVTPSREYATKTRIRTHRGKTGQELKEAALEP
SMEKIFKIDQMGRWFVAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTA
LSALAVARTPALMNFMMTGSWVTIGATFAAMIGAGMLVHSISYEQSPGPKHLAWMLHSGVMGAVVAPLTI
LGGPLLLRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFASSLGSMFLPPTSVAGATLYSVA
MYGGLVLFSMFLLYDTQKVIKRAEITPMYGAQKYDPINSMLTIYMDTLNIFMRVATMLATGSNRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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