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Report for CCDS26624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26624.1 Public Mus musculus 13 Srd5a1 23 108 98 CCDS HistoryNCBI Gene:78925Re-query CCDS DB by CCDS ID:26624.1Re-query CCDS DB by GeneID:78925See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26624.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091514.5 ENSMUSP00000089097.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091514.5Link to Ensembl Protein Viewer:ENSMUSP00000089097.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000091514Re-query CCDS DB by Protein ID:ENSMUSP00000089097
Original member Current member NCBI NM_175283.3 NP_780492.2 Accepted alive Link to Nucleotide Sequence:NM_175283.3Link to Protein Sequence:NP_780492.2Re-query CCDS DB by Nucleotide ID:NM_175283Re-query CCDS DB by Protein ID:NP_780492Link to BLAST:NP_780492.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780492.2 255 Q68FF9 255 99.6078% 0 1

Chromosomal Locations for CCDS 26624.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 69575130 69575196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69586585 69586735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69594916 69595017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69600231 69600397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69610967 69611247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGGAGTTGGATGAGTTGCGCCTACTGGATGCGCTAGTCTACCTGGAGGGTTTCCTGGCTTTCGTGGCCT
TCGTGGGGCTCCAGATGGTGGGCTCTTCCTACGGCCGCTACTCCTCGCAGTGGTCCGGCCGCCGAGTGCC
CGCGCGACCTGCCTGGTTCCTACAGGAGCTGCCTTCAATGGCCTGGCCGCTGTACGAGTGCATCCGTCCT
GCAGCCGCCCGACTGGGCAACCTGCCTAACCGCGTCCTGCTAGCTATGTTTCTGATCCACTACGTGCAAA
GGACGCTGGTTTTTCCAGTTCTGATCAGGGGAGGGAAGCCCACCCTGCTGTTCACCTTTGTCTTGGCCTT
CCTGTTCTGCACCTTAAATGGCTACTTGCAGAGCCGATACTTGAGCCAGTTTGCGGTGTATGCTGAAGAC
TGGGTAACCCATCCCTGTTTCCTGACAGGCTTTGCCCTGTGGTTAGTGGGCATGGTGATAAATATCCACT
CAGACCACATCCTGCGGAATCTGAGAAAACCAGGGGAAACTGGATACAAAATACCCAGGGGAGGCCTGTT
TGAATATGTATCTTCAGCCAACTATTTTGGGGAGCTCGTGGAGTGGTGTGGCTTTGCACTGGCCAGCTGG
TCCCTCCAGGGCGTGGTGTTTGCTCTGTTCACCCTGTGTGCACTGTTCACCAGAGCGAGGCAGCATCATC
AGTGGTACCTCGAGAAGTTTGAAGATTACCCCAAAACAAGAAAAATACTAATTCCATTCCTGCTTTAG

Translation (255 aa):
MELDELRLLDALVYLEGFLAFVAFVGLQMVGSSYGRYSSQWSGRRVPARPAWFLQELPSMAWPLYECIRP
AAARLGNLPNRVLLAMFLIHYVQRTLVFPVLIRGGKPTLLFTFVLAFLFCTLNGYLQSRYLSQFAVYAED
WVTHPCFLTGFALWLVGMVINIHSDHILRNLRKPGETGYKIPRGGLFEYVSSANYFGELVEWCGFALASW
SLQGVVFALFTLCALFTRARQHHQWYLEKFEDYPKTRKILIPFLL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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