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Report for CCDS26593.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26593.2 Public Mus musculus 13 Ercc6l2 23 108 98 CCDS HistoryNCBI Gene:76251Re-query CCDS DB by CCDS ID:26593.2Re-query CCDS DB by GeneID:76251See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 26593.1
This CCDS ID was withdrawn because the CDS was partial, and there is insufficient transcript evidence in mouse to predict its full-length nature.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26593.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238465.1 ENSMUSP00000158755.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238465.1Link to Ensembl Protein Viewer:ENSMUSP00000158755.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238465Re-query CCDS DB by Protein ID:ENSMUSP00000158755
Original member NCBI NM_001013608.3 NP_001013626.2 Updated not alive Link to Nucleotide Sequence:NM_001013608.3Link to Protein Sequence:NP_001013626.2Re-query CCDS DB by Nucleotide ID:NM_001013608Re-query CCDS DB by Protein ID:NP_001013626
Current member NCBI NM_001013608.4 NP_001013626.2 Accepted alive Link to Nucleotide Sequence:NM_001013608.4Link to Protein Sequence:NP_001013626.2Re-query CCDS DB by Nucleotide ID:NM_001013608Re-query CCDS DB by Protein ID:NP_001013626Link to BLAST:NP_001013626.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013626.2 1537 Q9JIM3-1 1537 100% 0 0

Chromosomal Locations for CCDS 26593.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 63815475 63815517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63819631 63820055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63824809 63824928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63834596 63834789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63841424 63841585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63841962 63842169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63844546 63844686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63847341 63847454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63848741 63848860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63852951 63853022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63853628 63853773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63858231 63858326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63865958 63866057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63869026 63869178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63870689 63870769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63871796 63872927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63877379 63877533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63894638 63894819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63898534 63899503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4614 nt):
ATGGACATCTCCGCCCCGCAGTCCCGCGCAGACTCCCGCAAAGACAGGTGGTGTCCGGGAGAAAGATGTC
TTGCTCCATCTTTGGATAACAAAAAGCTTTGTGAAGCAAGCATAAAATCTATTACTGTGGATGGAAATGG
GAAACCTTTTGCAGTTGTCCTGTATCCAGACTTTCAAGAAAAGACAATACCTCTTCAAAGACTTCAAGAA
GTAAAATCAACTAAAGATTACTCCAGAAGTCTTATATTTGATGATAAAGATTTAGAAAAACCTTATTTCC
CAGATCGAAAAATTCCATCTTTGGCTAGTGCTTTTCAATTATCTGAAGATGGAGACTCAATTCCTTATAC
TATTAATAGGTACTTGCGAGATTACCAAAGGGAGGGGGCTCAGTTCCTCTACAGACACTACATAGAGGGG
AGAGGGTGTATTCTTGGTGATGACATGGGACTTGGAAAAACAATACAGGTTATTTCATTTCTGGCTGCAG
TTTTGCATAAAAAGGGAACTCGTGAAGATATTGAAAATAACATGCCAGAGTTTTTACTAAAAAGTATGAA
AAAGAAGCCGCCTTCTACAGCTAAAAAGATGTTCTTAATAGTTGCTCCTCTTTCTGTCCTCTACAACTGG
AAGGATGAATTGGATACCTGGGGATATTTCAGAGTTACTGTTTTACACGGTAGCAAAAAAGACAATGAGC
TGCTTCGTTTAAAGCAGAGGAAATGTGAAATTGCTCTGACGACCTATGAAACACTGCGCTTGTGTCTGGA
GGAGCTTAACAGTTTGGAATGGTCAGCTATTATTGTAGATGAAGCTCATAGAATCAAGAATCCAAAAGCC
CGAGTTACAGAAGTTATGAAGGCTGTGAAGTGTAAGGTCCGCATTGGCCTCACTGGTACTGTCCTTCAGA
ACAACATGAAGGAGCTGTGGTGTGTCATGGACTGGGCTGTGCCAGGACTTTTAGGTAGCAGGATTCACTT
CAAGAAGCAATTTTCTGACCCAGTGGAACATGGCCAGAGACACACAGCAACAAAAAGAGAACTTGCTACT
GGCCGAAAAGCCATGCACAGGCTTGCAAAAAAGATGTCTGGCTGGTTTCTCAGGCGTACCAAGACTCTTA
TCAAGGGCCAGCTGCCTAAGAAAGAAGACCGGATGGTGTATTGTTCTTTGACAGACTTCCAGAAAGCTGT
CTACCAAACAGTGTTAGAAACAGAAGATGTGGCTCTGATCCTCACATCCTCTCAGCCTTGTACCTGTGGC
AGTGGCCAGAAGCGCAGAAAGTGTTGTTACAAGACCAACTCACGGGGTGACACAGTGAGAACCTTGTGCC
TTAGTTACCTGACTGTGCTTCAGAAAGTAGCTAACCATGTTGCACTGCTGCAGGCTGCTAGCACCTCCAA
ACATCAGGAAACAGTTATCAAGAGGATATGTGATCGGGTATTTTCCAGATTCCCAGATTTTGTGCAGAAA
AGCAAAGATGCAGCCTTTGAGACACTTTCTGACCCTAAATATAGTGGGAAAATGAAGGTCCTCCAGCAGC
TTTTGAATCATTTTAGGAAACAAAGAGATAAGGTTCTTCTCTTTTCCTTTTCCACCAAGCTGCTGGATGT
GCTGCAGCAGTACTGTATGGCCTCGGGCCTCGATTACCGGCGACTCGATGGAAGCACAAAGTCCGAGGAA
AGGCTCAAGATTGTGAAGGAGTTTAACAGTTCACAAGATGTGAACATTTGTCTTGTCTCCACAATGGCTG
GTGGACTAGGTCTCAATTTTGTTGGGGCCAACGTTGTTATATTATTTGATCCAACTTGGAATCCAGCCAA
CGATCTTCAAGCTGTTGACAGAGCGTATAGGATTGGACAGTGTAGAGACGTTAAAGTGCTTAGGCTAATA
TCCTTGGGCACAGTGGAGGAGATCATGTACTTACGACAAGTCTACAAGCAGCAACTTCACTGTGTGGTGG
TTGGAAGTGAAAATGCCAAGCGATACTTTGAAGCAGTACAAGGATCAAAAGAACATCGAGGAGAGCTCTT
TGGTGTCCACAACCTCTTCAAACTAAGGTCCCAAGGGTCATGTCTTACGAGAGACATCCTGGAGAGGGAA
GGCCAAGTGGAAGCTGGCATCATGACAGCCACAACATGGTTGAAAGGGGAACCTTCAGCACAAGAACTAG
AAACACCTAGAGACCCTGACTGTCAAGAACCCACAGATGTTTGTGAGCTCTACAGCGACATCAGTGATGA
GGAGTCGGTGGGCCATTCCCTGGGAAAGACTGATAAACACAAATTCTCTGACACCAGTAGAACTCCAGGC
TTCCCAGCACAGCTCACTTTGCTACAATGTGGATTCTCTAAGTTGTTTGAGGCAAAGTATAAGTCAGACC
AGGATGGCGATGGCAACCCTGTCCCCAGTGACGGAAGTTCTGATGAGCAGCCCATGTGTCTTTCTGCAGA
AGCCAGACAGGCTGCTCGTCAAAAGACTTGGGACTCTGTTTGTACTTCAGAACATCAGAAATCAGATAAC
ATCCAAACTCCAGATGAAAAATGTGTTTCTGATAAAAGTGAAAAGACTTTAGAACAGAATGTTTCTTCTG
AATCTGATGATGAGACAAAGGATCACCGTACAGCTGGACATCATTGCATGGGACAGGGTGACACAGAGTC
AGAAGACAGTGATGTCATCTTTCCCACACAGTATCCCACTCAGAGAATCCCTAAGAACCATATACGCTTT
AAGCTGCTGTTAGGTGAATCTGAAGATTCTGAAGCAGAAAACCCTGTGAAAGTAAATCATGGTGATGACA
GACAGAACAGTGGCAGAGGGAATGGACCAGTTCCAAATCTCTTGTGTCTCGAGAACATGACCTCAAAATC
TGTTAGGAAAAGAAAAGGTACAGATGATATTAGCGATGAGTCTGATGACATTGACATGTTCCCCAAGTCA
AGAATAAGAAAGCAAAGAGCCACTACTTCCTTGAAATTTAAGAGAAAAAAGGAAAACAAAAGGAAACTTG
ATAATTCTCCTGTAACAGCAAAGGAAGCAAATCAAGTGTGTGCAGCTGATGGAGACCGTAGCTCTCAGGT
TATTGAGGATTTTTCATCCTCAGATGACAATTTATCTCTCAGCCACTTGAGTTTCACTAAACTAAGTCAC
AGAGCAGAAACTGTAAAAGATAAAATCAGCTTGTCCCCCAAGCTGCCTGGCCCAGATAAGAAAAATAACA
CTTTTATATCAAGAAAACCACCAAGCTTTCTAAATGAAGGAGTTATCAGTCAAGAGCAAATATGCAACTC
AATGGATAAAATATTAGATGGTGTTCAGGAAGTGGCTTATATCCACTCAAATCAGAATGTGATCGGCTCA
AGCAGAGCTGAGAACCACATGAGCCGATGGGCAACGCGTGATGTGTTTGAGTTGAAGCAGTTTTCCCAGC
TCCCTGCTAATGTAGCTGTTTGCAGTTCTAAGACATACAAAACTCAGGTGAAGGCAAACATAGTGTCACC
TACAGAGAAAGATCAACCACCAAGTGATGGAGGCATTTCCTCTCCTCTGTACGTATCCCACCCTGTAGTC
CAGAAAAAGAAAGATGTATATCGTACTAACCATACTACCTTCATCATTGGAGAAACACCAAGAGGAATCC
GCAGAAAGCAGTTTGAAGAAATGGCCTCTTACTATAAGCTGCCTGTAAAGGAGTTTGCTGAACAAGTTAC
TAGGGCCACATCTGAAGAGCGACAGAAAATGCTCAGAGACTTCTACAGTCTTCAGCACCCAGAGGTAAAG
GAGTTCTTTGTGAATTCTGCTTCAGAATTGATAAAATCTGTCCACAAGAAAGAAGAGAGGGTGAGGAATA
AATCTAAAGAAAAAGAATCTCTTTTAAAAGAAAACCCCTCAAATGATAGTACTTTATCATGTTATGATTC
CACCAACAAAATGTCTCAAGTTTACAACAGAAAAATATGTGAAGGAAAATCAGTCAGATCTCAGAATCAT
GTTTTCCATAGAGAAGACACATTTTCTAGTGATGCAGAGATTAACAAATCACCTGTCAGCTTTACTGAAG
AGCTTCACAGTGAGAGAAAGGACCACACACCCAAGGATACCACAACAGTCTTCTGTCCAAACAGCAACTC
TGAAGCCCTGGAGGCAGAGCTAGGAAATTCCCCAGGACGTCAGTGGGACCTCACAGGAGCATGCGGTTCA
AGAAACAGACCACTTTTCAAGTTGAGAAACAAAAGGGTAGAAAACCCAGGGTCAGAAAACACTCCTGAGG
ATGGCTTACTTGGTGACACCTCTATTCTTAACGACCTCTTTAAAAGCCACGGGGAAGGTCCCACACAGCT
GCCAAAGAATGTTCTTTCAGGACCTGTGGCAAAAGCAAAGCAGAAACCAAAAGATTTCTGGGACATCTTG
AATGAGCAGAATGATGACAGTCTCAGCAAACTCACTGACTTGGCAGTGATAGAGACGCTGTGTACCAAAG
CACCCAGTACCTCAGCCTCCAAAAGGAAAGATGAGCTGGAAGCTTCCCTTTGGAAAGCAAACGAGAAGTT
TTTGTGGAAGACATTAAGCTCAGATGTTGACGATGAAAGCATAAGCAATACAGAGAGAGAGTAG

Translation (1537 aa):
MDISAPQSRADSRKDRWCPGERCLAPSLDNKKLCEASIKSITVDGNGKPFAVVLYPDFQEKTIPLQRLQE
VKSTKDYSRSLIFDDKDLEKPYFPDRKIPSLASAFQLSEDGDSIPYTINRYLRDYQREGAQFLYRHYIEG
RGCILGDDMGLGKTIQVISFLAAVLHKKGTREDIENNMPEFLLKSMKKKPPSTAKKMFLIVAPLSVLYNW
KDELDTWGYFRVTVLHGSKKDNELLRLKQRKCEIALTTYETLRLCLEELNSLEWSAIIVDEAHRIKNPKA
RVTEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELAT
GRKAMHRLAKKMSGWFLRRTKTLIKGQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVALILTSSQPCTCG
SGQKRRKCCYKTNSRGDTVRTLCLSYLTVLQKVANHVALLQAASTSKHQETVIKRICDRVFSRFPDFVQK
SKDAAFETLSDPKYSGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEE
RLKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLI
SLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYFEAVQGSKEHRGELFGVHNLFKLRSQGSCLTRDILERE
GQVEAGIMTATTWLKGEPSAQELETPRDPDCQEPTDVCELYSDISDEESVGHSLGKTDKHKFSDTSRTPG
FPAQLTLLQCGFSKLFEAKYKSDQDGDGNPVPSDGSSDEQPMCLSAEARQAARQKTWDSVCTSEHQKSDN
IQTPDEKCVSDKSEKTLEQNVSSESDDETKDHRTAGHHCMGQGDTESEDSDVIFPTQYPTQRIPKNHIRF
KLLLGESEDSEAENPVKVNHGDDRQNSGRGNGPVPNLLCLENMTSKSVRKRKGTDDISDESDDIDMFPKS
RIRKQRATTSLKFKRKKENKRKLDNSPVTAKEANQVCAADGDRSSQVIEDFSSSDDNLSLSHLSFTKLSH
RAETVKDKISLSPKLPGPDKKNNTFISRKPPSFLNEGVISQEQICNSMDKILDGVQEVAYIHSNQNVIGS
SRAENHMSRWATRDVFELKQFSQLPANVAVCSSKTYKTQVKANIVSPTEKDQPPSDGGISSPLYVSHPVV
QKKKDVYRTNHTTFIIGETPRGIRRKQFEEMASYYKLPVKEFAEQVTRATSEERQKMLRDFYSLQHPEVK
EFFVNSASELIKSVHKKEERVRNKSKEKESLLKENPSNDSTLSCYDSTNKMSQVYNRKICEGKSVRSQNH
VFHREDTFSSDAEINKSPVSFTEELHSERKDHTPKDTTTVFCPNSNSEALEAELGNSPGRQWDLTGACGS
RNRPLFKLRNKRVENPGSENTPEDGLLGDTSILNDLFKSHGEGPTQLPKNVLSGPVAKAKQKPKDFWDIL
NEQNDDSLSKLTDLAVIETLCTKAPSTSASKRKDELEASLWKANEKFLWKTLSSDVDDESISNTERE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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