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Report for CCDS26389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26389.1 Public Mus musculus 13 Prl 23 108 98 CCDS HistoryNCBI Gene:19109Re-query CCDS DB by CCDS ID:26389.1Re-query CCDS DB by GeneID:19109See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110369.9 ENSMUSP00000105998.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110369.9Link to Ensembl Protein Viewer:ENSMUSP00000105998.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110369Re-query CCDS DB by Protein ID:ENSMUSP00000105998
Original member Current member NCBI NM_011164.2 NP_035294.2 Accepted alive Link to Nucleotide Sequence:NM_011164.2Link to Protein Sequence:NP_035294.2Re-query CCDS DB by Nucleotide ID:NM_011164Re-query CCDS DB by Protein ID:NP_035294Link to BLAST:NP_035294.2

Chromosomal Locations for CCDS 26389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27057624 27057657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27059382 27059554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27061497 27061604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27064267 27064446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27064859 27065050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGACCATGAACAGCCAGGGGTCAGCCCAGAAAGCAGGGACACTCCTCCTGTTGCTGATATCAAACCTGC
TGTTCTGCCAAAATGTTCAGCCTCTGCCAATCTGTTCCGCTGGTGACTGCCAGACTTCTCTCCGAGAGCT
GTTTGACCGTGTGGTCATACTTTCTCACTACATCCATACCCTGTATACAGATATGTTCATTGAATTCGAT
AAACAGTATGTGCAAGACCGTGAGTTTATGGTCAAGGTCATCAATGACTGCCCCACTTCTTCCCTGGCTA
CACCTGAAGACAAGGAACAAGCCCTGAAAGTCCCTCCGGAAGTTCTTCTGAACCTGATCCTCAGTTTGGT
GCAGTCCTCGAGTGACCCTCTGTTTCAACTAATAACTGGAGTAGGTGGTATTCAAGAAGCCCCCGAATAC
ATCCTATCAAGAGCCAAAGAGATTGAGGAACAAAACAAGCAGCTTCTTGAGGGAGTTGAGAAGATAATTA
GCCAGGCCTATCCTGAAGCCAAAGGAAATGGGATCTACTTTGTTTGGTCACAACTTCCATCCCTACAGGG
AGTTGATGAAGAATCCAAAATCTTGTCTTTGCGCAACACCATTCGCTGCCTGCGCAGGGATTCCCACAAG
GTTGACAATTTTCTCAAGGTCCTGAGGTGCCAAATTGCCCATCAAAACAACTGCTAA

Translation (228 aa):
MTMNSQGSAQKAGTLLLLLISNLLFCQNVQPLPICSAGDCQTSLRELFDRVVILSHYIHTLYTDMFIEFD
KQYVQDREFMVKVINDCPTSSLATPEDKEQALKVPPEVLLNLILSLVQSSSDPLFQLITGVGGIQEAPEY
ILSRAKEIEEQNKQLLEGVEKIISQAYPEAKGNGIYFVWSQLPSLQGVDEESKILSLRNTIRCLRRDSHK
VDNFLKVLRCQIAHQNNC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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  VEGA Genome Browser

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