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Report for CCDS25969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25969.1 Public Mus musculus 12 Rtn1 23 108 98 CCDS HistoryNCBI Gene:104001Re-query CCDS DB by CCDS ID:25969.1Re-query CCDS DB by GeneID:104001See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25969.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021497.15 ENSMUSP00000021497.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021497.15Link to Ensembl Protein Viewer:ENSMUSP00000021497.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000021497Re-query CCDS DB by Protein ID:ENSMUSP00000021497
Original member Current member NCBI NM_001007596.2 NP_001007597.1 Accepted alive Link to Nucleotide Sequence:NM_001007596.2Link to Protein Sequence:NP_001007597.1Re-query CCDS DB by Nucleotide ID:NM_001007596Re-query CCDS DB by Protein ID:NP_001007597Link to BLAST:NP_001007597.1

Chromosomal Locations for CCDS 25969.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 72212535 72212577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72216771 72216829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72216915 72216961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72217419 72217488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72219257 72219395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72223332 72223539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72236529 72236589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGCAGGCCACTGCCGATTCCACCAAGATGGACTGTGTGTGGAGCAACTGGAAAAGTCAGGCTATTGACC
TTCTGTACTGGCGGGACATCAAGCAGACTGGGATTGTGTTCGGGAGCTTCCTGCTGCTGCTCTTCTCCCT
GACCCAGTTCAGCGTTGTGAGCGTCGTTGCCTACCTGGCCCTGGCCGCCCTCTCTGCCACCATCAGCTTC
CGCATCTACAAGTCCGTTCTACAAGCTGTGCAGAAAACAGATGAGGGTCACCCTTTCAAGGCCTACCTGG
AGCTGGAGATCACCCTGTCCCAGGAGCAGATCCAGAAGTACACAGACTGCCTGCAGCTGTATGTGAACAG
CACTCTGAAGGAGCTACGGAGGCTTTTCCTGGTCCAGGACCTGGTGGATTCCTTAAAATTTGCAGTCCTC
ATGTGGCTCCTGACCTACGTTGGCGCGCTCTTCAATGGCCTGACCCTGCTGCTTATGGCTGTGGTTTCGA
TGTTTACTCTACCTGTTGTGTACGTTAAGCACCAGGCACAAGTTGACCAATATCTGGGACTTGTGAGGAC
TCACATAAACACCGTCGTGGCAAAGATCCAGGCTAAAATCCCCGGCGCCAAGAGGCACGCTGAGTAG

Translation (208 aa):
MQATADSTKMDCVWSNWKSQAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISF
RIYKSVLQAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVL
MWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVAKIQAKIPGAKRHAE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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