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Report for CCDS24911.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24911.1 Public Mus musculus 11 Fgf11 23 108 98 CCDS HistoryNCBI Gene:14166Re-query CCDS DB by CCDS ID:24911.1Re-query CCDS DB by GeneID:14166See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24911.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102585.1 ENSMUSP00000099645.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102585.1Link to Ensembl Protein Viewer:ENSMUSP00000099645.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102585Re-query CCDS DB by Protein ID:ENSMUSP00000099645
Original member Current member NCBI NM_001362623.1 NP_001349552.1 Accepted alive Link to Nucleotide Sequence:NM_001362623.1Link to Protein Sequence:NP_001349552.1Re-query CCDS DB by Nucleotide ID:NM_001362623Re-query CCDS DB by Protein ID:NP_001349552Link to BLAST:NP_001349552.1
Original member Current member NCBI NM_010198.3 NP_034328.1 Accepted alive Link to Nucleotide Sequence:NM_010198.3Link to Protein Sequence:NP_034328.1Re-query CCDS DB by Nucleotide ID:NM_010198Re-query CCDS DB by Protein ID:NP_034328Link to BLAST:NP_034328.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349552.1 225 P70378 225 100% 0 0
NP_034328.1 225 P70378 225 100% 0 0

Chromosomal Locations for CCDS 24911.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69798202 69798272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69798564 69798762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69799352 69799455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69799666 69799776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69801433 69801625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGGCGGCGTTGGCCAGTAGCCTGATCCGACAGAAGCGGGAGGTCCGCGAGCCCGGGGGCAGCCGGCCCG
TG
TCGGCGCAGCGGCGCGTGTGTCCCCGCGGTACCAAGTCACTTTGCCAGAAACAGCTCCTCATCCTGCT
G
TCCAAGGTGCGACTGTGCGGGGGGCGTCCCACGCGACAGGACCGCGGCCCAGAGCCTCAGCTCAAAGGC
ATC
GTCACCAAACTGTTCTGCCGCCAGGGTTTCTACCTCCAGGCGAATCCCGATGGGAGTATCCAGGGCA
CC
CCAGAGGACACCAGCTCCTTCACCCACTTCAATCTGATTCCTGTGGGACTCCGTGTGGTCACCATCCA
G
AGTGCCAAGCTGGGTCACTACATGGCCATGAACGCTGAGGGGCTATTGTACAGCTCGCCACATTTCACA
GCA
GAGTGTCGCTTTAAGGAGTGCGTCTTTGAGAATTACTATGTCCTGTATGCCTCTGCTCTCTACCGTC
AG
CGTCGTTCTGGCCGGGCCTGGTACCTAGGCCTGGACAAGGAAGGCCGGGTCATGAAGGGAAACCGAGT
C
AAGAAGACCAAGGCAGCTGCCCACTTTGTGCCCAAGCTCCTGGAGGTGGCCATGTACCGGGAGCCTTCT
CTC
CACAGTGTTCCTGAGACCTCCCCTTCCAGTCCCCCTGCCCACTGA


Translation (225 aa):
MAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTKSLCQKQLLILLSKVRLCGGRPTRQDRGPEPQLKG
I
VTKLFCRQGFYLQANPDGSIQGTPEDTSSF
THFNLIPVGLRVVTIQSAKLGHYMAMNAEGLLYSSPHFT
A
ECRFKECVFENYYVLYASALYRQRRSGRAWYLGLDKEGRVMKGNRVKKTKAAAHFVPKLLE
VAMYREPS
L
HSVPETSPSSPPAH




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser