NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24360.1 Public Mus musculus 11 Limk2 23 108 98 CCDS HistoryNCBI Gene:16886Re-query CCDS DB by CCDS ID:24360.1Re-query CCDS DB by GeneID:16886See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110029.8 ENSMUSP00000105656.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110029.8Link to Ensembl Protein Viewer:ENSMUSP00000105656.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110029Re-query CCDS DB by Protein ID:ENSMUSP00000105656
Original member Current member NCBI NM_001034030.2 NP_001029202.1 Accepted alive Link to Nucleotide Sequence:NM_001034030.2Link to Protein Sequence:NP_001029202.1Re-query CCDS DB by Nucleotide ID:NM_001034030Re-query CCDS DB by Protein ID:NP_001029202Link to BLAST:NP_001029202.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001029202.1 451 O54785-3 451 100% 0 0

Chromosomal Locations for CCDS 24360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3345740 3345884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3346235 3346392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3347052 3347107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3347574 3347748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3348594 3348659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3350392 3350448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3350642 3350773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3352291 3352377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3353277 3353463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3355273 3355469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3355811 3355906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGCACATCAGTCCCAACAACCGAAATGCCATCCACCCTGGGGACCGCATCTTGGAGATCAATGGGACCC
CTGTCCGTACTCTGCGAGTAGAGGAGGTGGAGGATGCAATAAAGCAGACAAGCCAGACACTTCAGCTGCT
GATTGAACATGACCCTGTGCCCCAGCGCCTGGACCAGCTACGGCTAGATGCCCGACTTCCTCCCCACATG
CAGAGCACCGGACACACGCTCATGCTCAGCACCTTGGACACCAAGGAGAATCAGGAGGGGACACTGAGGA
GACGTTCTCTGAGGCGCAGTAACAGCATCTCCAAGTCTCCGGGCCCCAGCTCCCCCAAGGAGCCCCTGCT
CCTCAGCCGGGACATAAGCCGCTCAGAATCCCTCCGCTGCTCTAGCAGCTACTCCCAGCAGATCTTCCGG
CCCTGCGACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTTGGGCAGGCCATCAAGGTGACTCACA
AAGCCACAGGCAAAGTGATGGTCATGAAGGAGTTGATCCGCTGTGATGAGGAAACCCAGAAGACTTTCCT
GACTGAGGTGAAAGTGATGCGGAGCCTGGACCACCCTAATGTGCTCAAGTTCATCGGAGTTCTGTACAAG
GACAAGAAGCTGAATCTGCTGACCGAGTACATCGAGGGAGGCACACTCAAAGACTTCCTGCGCAGTGTGG
ACCCGTTCCCCTGGCAACAGAAGGTCAGGTTTGCCAAAGGCATCTCCTCTGGAATGGCCTATTTACACTC
CATGTGCATCATCCACCGGGACCTGAACTCACACAACTGTCTCATCAAATTGGACAAGACAGTGGTAGTA
GCCGACTTTGGGCTGTCACGGCTTATAGTAGAAGAGAGGAAAAGGCCTCCAGTAGAGAAGGCCACCACCA
AGAAACGCACCTTACGCAAGAGTGACCGCAAAAAGCGCTACACTGTGGTGGGAAACCCCTACTGGATGGC
CCCCGAGATGCTGAATGGCAAGAGCTACGATGAGACGGTGGATGTCTTCTCTTTTGGGATCGTTCTCTGT
GAGATCATTGGGCAGGTATATGCGGATCCTGATTGCCTGCCCCGCACACTGGACTTTGGCCTCAATGTTA
AGCTTTTCTGGGAGAAGTTTGTCCCAACAGACTGTCCCCCAGCCTTCTTCCCCCTGGCTGCTATCTGCTG
CAAACTAGAGCCTGAAAGCAGACCGGCATTCTCAAAGCTGGAGGACTCGTTCGAGGCGCTCTCCCTGTTC
TTGGGGGAGCTGGCCATCCCACTGCCAGCAGAGCTGGAAGACCTGGACCACACTGTGAGCATGGAGTATG
GCCTAACCCGGGACTCGCCACCCTAG

Translation (451 aa):
MHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQRLDQLRLDARLPPHM
QSTGHTLMLSTLDTKENQEGTLRRRSLRRSNSISKSPGPSSPKEPLLLSRDISRSESLRCSSSYSQQIFR
PCDLIHGEVLGKGFFGQAIKVTHKATGKVMVMKELIRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYK
DKKLNLLTEYIEGGTLKDFLRSVDPFPWQQKVRFAKGISSGMAYLHSMCIIHRDLNSHNCLIKLDKTVVV
ADFGLSRLIVEERKRPPVEKATTKKRTLRKSDRKKRYTVVGNPYWMAPEMLNGKSYDETVDVFSFGIVLC
EIIGQVYADPDCLPRTLDFGLNVKLFWEKFVPTDCPPAFFPLAAICCKLEPESRPAFSKLEDSFEALSLF
LGELAIPLPAELEDLDHTVSMEYGLTRDSPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH