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Report for CCDS23646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23646.1 Public Mus musculus 9 Abhd5 23 108 98 CCDS HistoryNCBI Gene:67469Re-query CCDS DB by CCDS ID:23646.1Re-query CCDS DB by GeneID:67469See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156520.7 ENSMUSP00000122274.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156520.7Link to Ensembl Protein Viewer:ENSMUSP00000122274.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156520Re-query CCDS DB by Protein ID:ENSMUSP00000122274
Original member Current member NCBI NM_026179.2 NP_080455.1 Accepted alive Link to Nucleotide Sequence:NM_026179.2Link to Protein Sequence:NP_080455.1Re-query CCDS DB by Nucleotide ID:NM_026179Re-query CCDS DB by Protein ID:NP_080455Link to BLAST:NP_080455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080455.1 351 Q9DBL9-1 351 100% 0 0

Chromosomal Locations for CCDS 23646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122351787 122351839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122365136 122365221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122367889 122368261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122375906 122376060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122377859 122377970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122378822 122379008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122379513 122379602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGAAAGCGATGGCGGCGGAGGAGGAGGTGGACTCGGCAGACGCCGGTGGAGGGTCAGGATGGCTGACAG
GG
TGGCTTCCTACCTGGTGTCCCACATCTACATCACACCTTAAAGAAGCTGAAGAGAAAATGTTAAAATG
T
GTCCCCTGCACTTACAAGAAAGAGCCTGTGCGCATATCCAATGGAAACAGAATATGGACGCTGATGTTC
TCT
CACAACATTTCTAGTAAGACGCCACTTGTCCTCCTTCATGGTTTTGGAGGAGGTCTTGGACTTTGGG
CC
CTGAATTTTGAAGATCTAAGCACCGATAGGCCTGTCTATGCCTTTGACCTATTGGGCTTCGGAAGAAG
T
AGTAGACCTAGGTTTGACAGTGATGCGGAAGAAGTGGAGAATCAGTTTGTGGAATCCATTGAAGAGTGG
AGA
TGTGCCCTCAGGTTGGACAAAATGATCTTGCTTGGACACAACCTGGGAGGGTTCTTGGCTGCCGCTT
AC
TCACTGAAGTACCCATCAAGGGTTAGTCACCTCATTTTAGTAGAGCCATGGGGTTTTCCTGAGCGACC
A
GATCTTGCTGATCAAGAGAGACCAATTCCAGTTTGGATCAGGGCCCTAGGGGCAGCATTGACTCCCTTT
AAC
CCCTTGGCTGGCCTCAGGATTGCAGGACCTTTTGGGTTAAGTCTAGTGCAGCGTTTGAGGCCTGATT
TC
AAGCGGAAGTACTCCTCTATGTTTGAAGATGACACGGTGACAGAGTACATCTACCACTGTAATGTACA
A
ACCCCAAGTGGTGAGACAGCTTTCAAAAACATGACGATTCCTTATGGGTGGGCCAAACGGCCAATGCTT
CAG
CGGATAGGTGGCTTGCATCCTGACATTCCAGTTTCAGTGATCTTTGGAGCCCGATCCTGCATAGATG
GC
AACTCTGGAACCAGCATCCAGTCACTGCGACCGAAGTCCTACGTGAAGACAATTGCCATCCTCGGGGC
G
GGGCATTATGTGTATGCAGATCAGCCAGAAGAATTCAACCAGAAAGTCAAGGAGATCTGCCACACAGTA
GAC
TGA


Translation (351 aa):
MKAMAAEEEVDSADAGGGSGWLTGWLPTWCPTSTSHLKEAEEKMLKCVPCTYKKEPVRISNGNRIWTLMF
S
HNISSKTPLVLLHGFGGGLGLWALNFEDLSTDRPVYAFDLLGFGRSSRPRFDSDAEEVENQFVESIEEW
R
CALRLDKMILLGHNLGGFLAAAYSLKYPS
RVSHLILVEPWGFPERPDLADQERPIPVWIRALGAALTPF
N
PLAGLRIAGPF
GLSLVQRLRPDFKRKYSSMFEDDTVTEYIYHCNVQTPSGETAFKNMTIPYGWAKRPML
Q
RIGGLHPDIPVSVIFGARSCIDGNSGTSIQSLRPKSYVKTI
AILGAGHYVYADQPEEFNQKVKEICHTV
D




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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