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Report for CCDS23530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23530.1 Public Mus musculus 9 Qars1 23 108 98 CCDS HistoryNCBI Gene:97541Re-query CCDS DB by CCDS ID:23530.1Re-query CCDS DB by GeneID:97541See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23530.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006838.15 ENSMUSP00000006838.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006838.15Link to Ensembl Protein Viewer:ENSMUSP00000006838.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000006838Re-query CCDS DB by Protein ID:ENSMUSP00000006838
Original member Current member NCBI NM_133794.2 NP_598555.2 Accepted alive Link to Nucleotide Sequence:NM_133794.2Link to Protein Sequence:NP_598555.2Re-query CCDS DB by Nucleotide ID:NM_133794Re-query CCDS DB by Protein ID:NP_598555Link to BLAST:NP_598555.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598555.2 775 Q8BML9 775 100% 0 0

Chromosomal Locations for CCDS 23530.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108508083 108508199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108508383 108508530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108508877 108508986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108509149 108509224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108509441 108509505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108510095 108510148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108510288 108510348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108511139 108511210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108511331 108511416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108511532 108511618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108512483 108512582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108512700 108512778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108512860 108512968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108513066 108513196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108513286 108513378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108513669 108513806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108513893 108513980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108514065 108514208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108514290 108514394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108514543 108514635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108514746 108514873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108514967 108515033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108515107 108515232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108515796 108515846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2328 nt):
ATGGCTACTCCAGATTCGCTAGCGCTGTTCACCGGCCTTGGCCTTAGCGAGAACAAGGCCCGCGAGACGC
TCAAGAACGAGGCTCTGAGCACTCAGCTGCGCGAGGCGGCGACCCAGGCACACCAGATTCTGGGTTCTAC
CATCGACAAGGCTACTGGGGTCCTCCTATATGACTTGGTCTCCCGACTCAGGGATACTCGGCGTCGTTCT
TTCCTTGTGAGCTATATAGCCAATAAGAAGATTCACACGGGACTCCAGCTGAGCGCTGCTCTTGAATATG
TTCGGAGTCATCCCCAGGATCCCATTGATACCAAGGACTTCGAGCAGGAGTGTGGCGTCGGTGTGGTGGT
GACACCGGAGCAGATTGAGGAAGCTGTGGAGTCCACCATAAATAAGCATCAGTTGCAGCTCCTAGCGGAA
CGGTACCGTTTCAACATGGGGCTGCTAATGGGAGAGGCTCGGGCTGCGCTCAGATGGGCAGACGGCAAAA
TGATCAAGAACGAGGTGGATATGCAGGTGCTTCACCTTTTGGGGCCCAAGATGGAAGCTGATCTGGTGAA
GAAGCCCAAGGTGGCAAAGGCACGGCTGGAAGAAACAGACCGGAAGACAGCAAAAGATGTGGTGGAGAAA
GGTGAAGTGGCTGGCCAGACCCTGTCTCTGATGGAGCAGCTCCGGGGGGAGGCACTTAAGTTTCATAAGC
CAGGTGAGAACTACAAGACGCCAGGCTATGTGATCACTCCATATACCATGGATCTGCTGAAGCAGCACCT
GGAGATCACTGGGGGACAGGTACGTACGCGGTTCCCTCCAGAGCCCAATGGAATCCTGCATATTGGACAC
GCCAAAGCCATCAATTTCAACTTTGGTTATGCCAAGGCCAACAATGGTATCTGTTTTCTGCGCTTTGATG
ACACCAACCCTGAGAAAGAAGAAGCAAAATTCTTCACTGCTATTTATGACATGGTGACCTGGCTGGGTTA
TACACCTTACAAAGTGACATATGCTTCTGACTATTTTGACCAGCTGTATGCCTGGGCCGTGGAACTCATC
CATGGGGGTCTTGCTTATGTGTGTCACCAGAGAGTGGAAGAGCTCAAAGGCCATAACCCTTTACCTTCTC
CATGGAGGGACAGGCCTAAGGAAGAATCATTGCTGCTCTTTGAGGCAATGCGCAAGGGCAAATTTGCAGA
AGGAGAGGCCACACTTCGAATGAAGTTGGTGATGGAAGATGGCAAGATGGACCCCGTGGCCTATCGAGTC
AAGTACACGCCACACCATCGCACAGGGGACAAATGGTGCATCTACCCCACCTATGACTACACACATTGTC
TGTGTGACTCCATTGAGCACATTACCCACTCGTTGTGTACCAAGGAGTTCCAGGCTCGACGGTCTTCCTA
CTTTTGGTTATGTAACGCTCTGAAAGTCTATTGTCCTGTTCAGTGGGAATATGGTCGCCTCAATTTGCAC
TATGCTGTTGTCTCAAAGCGCAAGATTCTCCAGCTTGTAGCAGCTGGTGCTGTTCGGGACTGGGACGATC
CACGGCTCTTCACACTCACTGCCCTACGACGACGGGGTTTTCCACCAGAGGCTATCAACAACTTCTGTGC
TCGGGTTGGGGTCACAGTGGCACAGACCACAATGGAACCTCATCTTCTGGAAGCCTGTGTGCGTGATGTG
CTGAATGATGCAGCCCCACGTGCCATGGCTGTTCTAGAGCCACTACAAGTTGTCATCACCAACTTTCCTG
CTCCCAAGCCCTTGGACATCCGAGTGCCAAATTTCCCAGCTGATGAGACCAAGGGTTTCCACCAGGTTCC
TTTTGCTTCCACTGTCTTCATTGAGAGAAGCGACTTTAAGGAGGAGTCAGAACCAGGCTATAAGCGCCTA
GCTTCGGGCCAGCCTGTGGGCCTGAGACACACTGGTTATGTCATTGAACTGCAGAATATTGTCAGGGGCT
CCAGTGGCTGTGTGGAACGCTTGGAGGTGACCTGTAGACGAGCTGATGCTGGAGAGAAGCCCAAGGCCTT
TATTCACTGGGTATCACAGCCTTTGGTGTGTGAGATTCGCCTCTATGAGTGCCTATTCCAGCACAAGAAC
CCCGAAGACCCTGTTGAAGTGCCTGGTGGATTCCTAAGTGACCTGAACCCGGCGTCACTACAAGTGGTAG
AAGGAGCATTAGTGGACTGCTCTGTGGCTTTGGCAAAGCCCTTTGACAAGTTCCAGTTTGAGCGCCTTGG
GTACTTCTCTGTGGATCCAGACAGCCATCAAGGACAGATTGTCTTCAACCGAACTGTCACACTAAAAGAA
GACCCAGGCAAAATATGA

Translation (775 aa):
MATPDSLALFTGLGLSENKARETLKNEALSTQLREAATQAHQILGSTIDKATGVLLYDLVSRLRDTRRRS
FLVSYIANKKIHTGLQLSAALEYVRSHPQDPIDTKDFEQECGVGVVVTPEQIEEAVESTINKHQLQLLAE
RYRFNMGLLMGEARAALRWADGKMIKNEVDMQVLHLLGPKMEADLVKKPKVAKARLEETDRKTAKDVVEK
GEVAGQTLSLMEQLRGEALKFHKPGENYKTPGYVITPYTMDLLKQHLEITGGQVRTRFPPEPNGILHIGH
AKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAIYDMVTWLGYTPYKVTYASDYFDQLYAWAVELI
HGGLAYVCHQRVEELKGHNPLPSPWRDRPKEESLLLFEAMRKGKFAEGEATLRMKLVMEDGKMDPVAYRV
KYTPHHRTGDKWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALKVYCPVQWEYGRLNLH
YAVVSKRKILQLVAAGAVRDWDDPRLFTLTALRRRGFPPEAINNFCARVGVTVAQTTMEPHLLEACVRDV
LNDAAPRAMAVLEPLQVVITNFPAPKPLDIRVPNFPADETKGFHQVPFASTVFIERSDFKEESEPGYKRL
ASGQPVGLRHTGYVIELQNIVRGSSGCVERLEVTCRRADAGEKPKAFIHWVSQPLVCEIRLYECLFQHKN
PEDPVEVPGGFLSDLNPASLQVVEGALVDCSVALAKPFDKFQFERLGYFSVDPDSHQGQIVFNRTVTLKE
DPGKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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