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Report for CCDS22511.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22511.1 Public Mus musculus 8 Nkd1 23 108 98 CCDS HistoryNCBI Gene:93960Re-query CCDS DB by CCDS ID:22511.1Re-query CCDS DB by GeneID:93960See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22511.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034086.12 ENSMUSP00000034086.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034086.12Link to Ensembl Protein Viewer:ENSMUSP00000034086.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034086Re-query CCDS DB by Protein ID:ENSMUSP00000034086
Original member Current member NCBI NM_027280.3 NP_081556.3 Accepted alive Link to Nucleotide Sequence:NM_027280.3Link to Protein Sequence:NP_081556.3Re-query CCDS DB by Nucleotide ID:NM_027280Re-query CCDS DB by Protein ID:NP_081556Link to BLAST:NP_081556.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081556.3 471 Q99MH6 471 100% 0 0

Chromosomal Locations for CCDS 22511.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 88521507 88521531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88521647 88521679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88522287 88522420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88574198 88574264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88583203 88583309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88585154 88585249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88589154 88589301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88589728 88589812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88590723 88590850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88591560 88592152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGGGAAACTTCACTCGAAGCCGGCCGCCGTGTGCAAGCGCAGGGAGAGCCCGGAAGGTGACAGCTTTG
CTGTAAGCGCTGCTTGGGCAAGGAAAGGCATCGAGGAGTGGATCGGGAGGCAGCGCTGTCCAGGCAGCGT
CTCAGGACCCCGTCAGCTGAGATTGGCAGGCACTGTTGGTCGAGGCACTCGGGAACTCGTGGGTGACACT
TCTAGAGAGGCTCTCGGTGAGGAGGACGAGGACGACTTCCCCCTAGAAGTGGCCCTGCCGCCTGAGAAGA
TTGACAGCCTAGGTAGTGGAGATGAGAAGAGAATGGAGAGACTGAGCGAACCTGGCCAGGCCTCCAAGAA
GCAGCTCAAGTTTGAAGAGCTGCAGTGTGATGTCTCTGTGGAGGAGGACAGCCGGCAAGAGTGGACTTTC
ACTCTATATGACTTCGACAACAATGGCAAAGTGACCCGTGAGGACATTACCAGCTTGCTGCATACCATCT
ATGAAGTGGTTGACTCCTCTGTGAACCATTCCCCCACATCAAGCAAGACACTGCGGGTGAAGCTCACCGT
GGCTCCTGACGGGAGCCAGAGTAAGAGGAGCGTCCTTTTCAACCATACCGATCTGCAGAGCACAAGGCCC
CGAGCAGACACCAAACCCGCTGAGGAGCTGCGTGGCTGGGAGAAGAAGCAGCGAGCCCCACTCAGGTTCC
AGGGTGACAGCCACCTGGAGCAGCCAGACTGCTACCACCATTGCGTGGATGAGAACATTGAGAGGAGAAA
CCACTACCTAGACCTGGCGGGGATAGAGAACTACACGTCTCAGTTTGGACCGGGATCCCCTTCGGTGGCC
CAGAAGTCAGAGCTGCCCCCTCGAATCTCCAACCCCACTCGCTCTCGCTCCCACGAGCCAGAAGCTGCCC
ACATCCCACACCGGAGGCCCCAAGGTGTGGACCCAGGCTCCTTCCACCTCCTTGACACCCCATTTGCCAA
GGCATCAGAGCTCCAGCAACGGCTCCGGGGCACTCAGGATGGGAGCAAGCACTTTGTGAGGTCCCCCAAG
GCCCAGGGCAAGAACATGGGTATGGGCCACGGGGCCAGAGGTGCAAGAAGCAAGCCTCCACTGGTACCCA
CCACCCATACTGTCTCCCCCTCTGCCCATCTGGCCACCAGCCCAGCCCTTCTCCCCACCCTGGCACCCCT
GGGGCACAAGAAACACAAGCATCGAGCCAAGGAGAGCCAGGCGAGCTGCCGGGGCCTGCAGGGCCCCCTG
GCTGCAGGAGGCTCCACCGTCATGGGGCGGGAGCAGGTGAGGGAGCTGCCTGCCGTGGTGGTGTACGAGA
GCCAGGCTGGGCAGGCCGTCCAGAGACACGAACACCATCACCACCACGAACATCACCACCATTACCACCA
CTTCTATCAGCCCTAG

Translation (471 aa):
MGKLHSKPAAVCKRRESPEGDSFAVSAAWARKGIEEWIGRQRCPGSVSGPRQLRLAGTVGRGTRELVGDT
SREALGEEDEDDFPLEVALPPEKIDSLGSGDEKRMERLSEPGQASKKQLKFEELQCDVSVEEDSRQEWTF
TLYDFDNNGKVTREDITSLLHTIYEVVDSSVNHSPTSSKTLRVKLTVAPDGSQSKRSVLFNHTDLQSTRP
RADTKPAEELRGWEKKQRAPLRFQGDSHLEQPDCYHHCVDENIERRNHYLDLAGIENYTSQFGPGSPSVA
QKSELPPRISNPTRSRSHEPEAAHIPHRRPQGVDPGSFHLLDTPFAKASELQQRLRGTQDGSKHFVRSPK
AQGKNMGMGHGARGARSKPPLVPTTHTVSPSAHLATSPALLPTLAPLGHKKHKHRAKESQASCRGLQGPL
AAGGSTVMGREQVRELPAVVVYESQAGQAVQRHEHHHHHEHHHHYHHFYQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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