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Report for CCDS22430.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22430.1 Public Mus musculus 8 Rbmxl1 23 108 98 CCDS HistoryNCBI Gene:19656Re-query CCDS DB by CCDS ID:22430.1Re-query CCDS DB by GeneID:19656See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22430.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049245.9 ENSMUSP00000048153.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049245.9Link to Ensembl Protein Viewer:ENSMUSP00000048153.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049245Re-query CCDS DB by Protein ID:ENSMUSP00000048153
Original member Current member EBI ENSMUST00000211719.1 ENSMUSP00000147384.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211719.1Link to Ensembl Protein Viewer:ENSMUSP00000147384.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211719Re-query CCDS DB by Protein ID:ENSMUSP00000147384
Original member Current member NCBI NM_001252089.1 NP_001239018.1 Accepted alive Link to Nucleotide Sequence:NM_001252089.1Link to Protein Sequence:NP_001239018.1Re-query CCDS DB by Nucleotide ID:NM_001252089Re-query CCDS DB by Protein ID:NP_001239018Link to BLAST:NP_001239018.1
Original member Current member NCBI NM_001358974.1 NP_001345903.1 Accepted alive Link to Nucleotide Sequence:NM_001358974.1Link to Protein Sequence:NP_001345903.1Re-query CCDS DB by Nucleotide ID:NM_001358974Re-query CCDS DB by Protein ID:NP_001345903Link to BLAST:NP_001345903.1
Original member Current member NCBI NM_001358975.1 NP_001345904.1 Accepted alive Link to Nucleotide Sequence:NM_001358975.1Link to Protein Sequence:NP_001345904.1Re-query CCDS DB by Nucleotide ID:NM_001358975Re-query CCDS DB by Protein ID:NP_001345904Link to BLAST:NP_001345904.1
Original member Current member NCBI NM_009033.2 NP_033059.2 Accepted alive Link to Nucleotide Sequence:NM_009033.2Link to Protein Sequence:NP_033059.2Re-query CCDS DB by Nucleotide ID:NM_009033Re-query CCDS DB by Protein ID:NP_033059Link to BLAST:NP_033059.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239018.1 388 Q91VM5 388 100% 0 0
NP_001345903.1 388 Q91VM5 388 100% 0 0
NP_001345904.1 388 Q91VM5 388 100% 0 0
NP_033059.2 388 Q91VM5 388 100% 0 0

Chromosomal Locations for CCDS 22430.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 78505546 78506712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACAGAAACAAATGAGAAAGCCC
TTGAAGCAGTATTTGGCAAGTATGGACGAATAGTGGAAATACTTTTGATGAAAGACCGGGAAACCAACAA
ATCAAGAGGATTTGCTTTTGTTACCTTCGAAAGCCCAGCAGATGCTAAAGATGCAGCTAGAGATATGAAT
GGAAAGTCCTTGGATGGAAAAGCCATCAAGGTGGAGCAAGCTACCAAACCATCTTTTGAAAGTGGCAGGC
GTGGACCACCTCCACCTCCAAGAAGCAGGGGCCCTCCCAGAGGTCTTCGAGGAGGAAGTGGAGGAACTAG
GGGACCCCCTTCACGTGGAGGATACATGGATGATGGTGGTTATTCCATGAACTTTAACATGAGTTCTTCC
AGGGGACCACTTCCAGTAAAGAGAGGACCACCACCACGAAGCGGGGGTCCCCCTCCTAAAAGATCAACAC
CTTCCGGACCAGTTCGAAGCAGCAGTGGAATGGGCGGAAGAACACCAGTGTCCCGTGGAAGAGATAGCTA
CGGGGGTCCACCACGAAGGGAACCCCTGCCATCTCGCAGAGATGTTTATTTGTCCCCAAGAGATGATGGA
TATTCTACAAAAGATAGCTATTCAAGCAGAGATTACCCAAGCTCCCGAGACACCAGAGATTATGCACCGC
CACCAAGAGATTATACTTACCGTGATTACAGTCATTCCAGTTCCCGTGATGACTATCCATCAAGAGGCTA
CGGTGATAGAGATGGATATGGTCGGGATCGTGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGAT
TCATATGAGAGTTATGGAAACTCACGCAGTGCACCCCCTACACGAGGGCCACCACCATCTTATGGAGGAA
GCAGTCGCTATGATGATTACAGCAGCTCACGTGATGGCTACGGTGGAAGTCGAGACAGTTACTCAAGCAG
CAGAAGTGATCTCTACTCAAGTGGCCGTGATCGAGTTGGCAGACAAGAACGAGGGCTTCCCCCTTCTATG
GAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGAGGAGCGCCAAGAGGAGGTGGCC
GTGGAGGGAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATATTAG

Translation (388 aa):
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDMN
GKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGSGGTRGPPSRGGYMDDGGYSMNFNMSSS
RGPLPVKRGPPPRSGGPPPKRSTPSGPVRSSSGMGGRTPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG
YSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD
SYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSM
ERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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