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Report for CCDS21739.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21739.1 Public Mus musculus 7 Nrip3 23 108 98 CCDS HistoryNCBI Gene:78593Re-query CCDS DB by CCDS ID:21739.1Re-query CCDS DB by GeneID:78593See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21739.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033331.6 ENSMUSP00000033331.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033331.6Link to Ensembl Protein Viewer:ENSMUSP00000033331.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033331Re-query CCDS DB by Protein ID:ENSMUSP00000033331
Original member Current member NCBI NM_020610.1 NP_065635.1 Accepted alive Link to Nucleotide Sequence:NM_020610.1Link to Protein Sequence:NP_065635.1Re-query CCDS DB by Nucleotide ID:NM_020610Re-query CCDS DB by Protein ID:NP_065635Link to BLAST:NP_065635.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065635.1 240 Q9JJR9 240 100% 0 0

Chromosomal Locations for CCDS 21739.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 109761174 109761189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109761647 109761741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109761821 109761873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109763484 109763623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109765466 109765548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109766473 109766634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109781300 109781473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGTTTTACTCAGGACTCCTCACCGAGGGCGGCCGCAAGGAGACAGACATGCGGGAAGCGGCGTCCCTGC
GGCAGCAGCGCCGGATGAAGCAGGCGGTGCAGTTCATCCACAAGGACTCAGCCGACCTGCTGCCCCTGGA
CGGCCTCAAAAAGCTGGGCTCGTCCAAGGACACGCAACCCCATAACATTCTGCAGAGGCGCCTCATGGAA
ACCAACCTGTCTAAGCTCCGGAGCACTCGTGTCCCTTGGGCCTCTAAGACCAACAAATTCAATCAGGCTA
AGTCTGAAGGGCTGAAGAAGTGTGAAGATGAAGACATGATTTTAGTGTCTTGCCAGTGTGCTGGGAAGGA
CGTGAAAGCTTTGGTTGACACTGGCTGTCAATATAATCTCATCTCCTCAGCCTGTGTGGACAGATTGGGA
CTAAAGGACCATGTCAAATCTCACAAGCATGAAGGGGAAAAGCTTTCTCTACCACGGCATCTCAAAGTAG
TTGGCCAGATTGAGCACCTAATGATCACAGTGGGTTCTCTCCGTCTGGATTGCCAAGCAGCTGTGGTTGA
TGATAATGAAAAAAGCTTATCACTTGGTCTCCAGACTCTTAGATCCCTGAAGTGCATCATAAACTTGGAC
AAGCACCGGCTGATTGTGGGGAAGACAGACAAAGAAGAAATCCCTTTTGTGGAGACAGTTTCTGTGAATG
ACGACAACACTTCAGAAGCATAA

Translation (240 aa):
MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDTQPHNILQRRLME
TNLSKLRSTRVPWASKTNKFNQAKSEGLKKCEDEDMILVSCQCAGKDVKALVDTGCQYNLISSACVDRLG
LKDHVKSHKHEGEKLSLPRHLKVVGQIEHLMITVGSLRLDCQAAVVDDNEKSLSLGLQTLRSLKCIINLD
KHRLIVGKTDKEEIPFVETVSVNDDNTSEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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