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Report for CCDS21316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21316.1 Public Mus musculus 7 Nipa2 23 108 98 CCDS HistoryNCBI Gene:93790Re-query CCDS DB by CCDS ID:21316.1Re-query CCDS DB by GeneID:93790See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032635.13 ENSMUSP00000032635.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032635.13Link to Ensembl Protein Viewer:ENSMUSP00000032635.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032635Re-query CCDS DB by Protein ID:ENSMUSP00000032635
Original member Current member EBI ENSMUST00000119041.7 ENSMUSP00000112394.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119041.7Link to Ensembl Protein Viewer:ENSMUSP00000112394.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119041Re-query CCDS DB by Protein ID:ENSMUSP00000112394
Original member Current member EBI ENSMUST00000117812.7 ENSMUSP00000113727.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117812.7Link to Ensembl Protein Viewer:ENSMUSP00000113727.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117812Re-query CCDS DB by Protein ID:ENSMUSP00000113727
Original member Current member EBI ENSMUST00000119201.7 ENSMUSP00000114020.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119201.7Link to Ensembl Protein Viewer:ENSMUSP00000114020.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119201Re-query CCDS DB by Protein ID:ENSMUSP00000114020
Original member Current member NCBI NM_001256130.1 NP_001243059.1 Accepted alive Link to Nucleotide Sequence:NM_001256130.1Link to Protein Sequence:NP_001243059.1Re-query CCDS DB by Nucleotide ID:NM_001256130Re-query CCDS DB by Protein ID:NP_001243059Link to BLAST:NP_001243059.1
Original member Current member NCBI NM_001256131.1 NP_001243060.1 Accepted alive Link to Nucleotide Sequence:NM_001256131.1Link to Protein Sequence:NP_001243060.1Re-query CCDS DB by Nucleotide ID:NM_001256131Re-query CCDS DB by Protein ID:NP_001243060Link to BLAST:NP_001243060.1
Original member Current member NCBI NM_001256132.1 NP_001243061.1 Accepted alive Link to Nucleotide Sequence:NM_001256132.1Link to Protein Sequence:NP_001243061.1Re-query CCDS DB by Nucleotide ID:NM_001256132Re-query CCDS DB by Protein ID:NP_001243061Link to BLAST:NP_001243061.1
Original member Current member NCBI NM_023647.6 NP_076136.2 Accepted alive Link to Nucleotide Sequence:NM_023647.6Link to Protein Sequence:NP_076136.2Re-query CCDS DB by Nucleotide ID:NM_023647Re-query CCDS DB by Protein ID:NP_076136Link to BLAST:NP_076136.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243059.1 359 Q9JJC8 359 100% 0 0
NP_001243060.1 359 Q9JJC8 359 100% 0 0
NP_001243061.1 359 Q9JJC8 359 100% 0 0
NP_076136.2 359 Q9JJC8 359 100% 0 0

Chromosomal Locations for CCDS 21316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 55932916 55933547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55935798 55935958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55937572 55937662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55942980 55943036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55944481 55944619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGAGCCTGGGGCGTGGAAAATATGATTTTTATATTGGTCTGGGATTGGCTATGACCTCCAGCATTTTCA
TTGGAGGGAGTTTCATTTTGAAAAAAAAAGGCCTTCTGCGACTTGCCAGGAAAGGCTCAATGAGAGCAGG
TCAAGGAGGCCATGCATATCTTAAGGAATGGTTGTGGTGGGCTGGACTGCTGTCAATGGGAGCCGGTGAA
GTGGCCAATTTTGCTGCATATGCATTTGCTCCGGCCACATTAGTGACTCCACTAGGTGCGCTCAGCGTCC
TCGTAAGTGCCATTCTGTCTTCATACTTCCTAAATGAAAGACTTAATCTTCATGGGAAAATTGGGTGTTT
GCTAAGTATTCTAGGGTCTACAGTTATGGTCATTCATGCTCCAAAGGAAGAGGAGATTGAGACCTTAAAT
GAAATGTCACATAAGTTAGGTGATCCAGGTTTTGTGGTCTTTGCAACATTTGTGGTCATTGTGGCCTTGA
TATTCATCTTTGTGGTGGGACCTCGACATGGACAGACAAACATTCTTGTGTATATAACAATCTGCTCTGT
GATTGGAGCATTTTCAGTCTCCTGTGTGAAGGGTTTGGGTATCGCCATAAAAGAGTTGTTGGCTGGAAAG
CCTGTTCTGCAGCACCCCCTCGCCTGGATTCTTCTGTTTAGCCTTGTGGTCTGTGTGAGCACACAGATTA
ATTACCTAAACCGGGCTCTGGACATTTTCAACACTTCCATTGTGACTCCAATATATTATGTGTTCTTTAC
AACTTCAGTTTTGACTTGTTCAGCTATTCTTTTTAAAGAATGGCAGGATATGCCTGTTGATGATGTCATT
GGGACTTTGAGTGGCTTCTTCACAATCATTGTGGGGATATTTTTGTTGCATGCCTTTAAAGATGTCAGTT
TTAGTCTAGCAAGTCTGCCAGTATCTTTTCGAAAAGATGAAAAGGCAATGAATGGCAATCTTTCTAGTAT
GTATGAAGTTCTTAATAATAATGAAGACGACTTACCCTGTGGAATTGAACACACTGGTGAAAATATTTCC
CGTAGGAATGGAAATCTGCCATCTTTTTAA

Translation (359 aa):
MSLGRGKYDFYIGLGLAMTSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGE
VANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEEIETLN
EMSHKLGDPGFVVFATFVVIVALIFIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKELLAGK
PVLQHPLAWILLFSLVVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVI
GTLSGFFTIIVGIFLLHAFKDVSFSLASLPVSFRKDEKAMNGNLSSMYEVLNNNEDDLPCGIEHTGENIS
RRNGNLPSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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