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Report for CCDS20588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20588.1 Public Mus musculus 6 Olr1 23 108 98 CCDS HistoryNCBI Gene:108078Re-query CCDS DB by CCDS ID:20588.1Re-query CCDS DB by GeneID:108078See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20588.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000032265.12 ENSMUSP00000032265.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032265.12Link to Ensembl Protein Viewer:ENSMUSP00000032265.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032265Re-query CCDS DB by Protein ID:ENSMUSP00000032265
Original member Current member NCBI NM_138648.2 NP_619589.2 Accepted alive Link to Nucleotide Sequence:NM_138648.2Link to Protein Sequence:NP_619589.2Re-query CCDS DB by Nucleotide ID:NM_138648Re-query CCDS DB by Protein ID:NP_619589Link to BLAST:NP_619589.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619589.2 363 Q9EQ09 363 100% 0 0

Chromosomal Locations for CCDS 20588.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 129487666 129487807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129488084 129488199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129488832 129488968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129493506 129493643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129496812 129496949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129499880 129500125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129502079 129502180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129507035 129507107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGACTTTTGATGACAAGATGAAGCCTGCGAATGACGAGCCTGATCAGAAGTCATGTGGCAAGAAGCCTA
AA
GGTCTGCATTTGCTTTCTTCCCCATGGTGGTTCCCTGCTGCTATGACTCTGGTCATCCTCTGCCTGGT
G
TTGTCAGTGACCCTTATTGTACAGTGGACACAATTACGCCAGGTATCTGACCTCTTAAAACAATACCAA
GCG
AACCTTACTCAGCAGGATCGTATCCTGGAAGGGCAGATGTTAGCCCAGCAGAAGGCAGAAAACACTT
CA
CAGGAATCAAAGAAGGAACTGAAAGGAAAGATAGACACCCTCACCCAGAAGCTGAACGAGAAATCCAA
A
GAGCAGGAGGAGCTTCTACAGAAGAATCAGAACCTCCAAGAAGCCCTGCAAAGAGCTGCAAACTCTTCA
G
AG
GAGTCCCAGAGAGAACTCAAGGGAAAGATAGACACCATCACCCGGAAGCTGGACGAGAAATCCAAAG
AG
CAGGAGGAGCTTCTGCAGATGATTCAGAACCTCCAAGAAGCCCTGCAGAGAGCTGCAAACTCTTCAGA
G
GAGTCCCAGAGAGAACTCAAGGGAAAGATAGACACCCTCACCTTGAAGCTGAACGAGAAATCCAAAGAG
CAG
GAGGAGCTTCTACAGAAGAATCAGAACCTCCAAGAAGCCCTGCAAAGAGCTGCAAACTTTTCAGGTC
CT
TGTCCACAAGACTGGCTCTGGCATAAAGAAAACTGTTACCTCTTCCATGGGCCCTTTAGCTGGGAAAA
A
AACCGGCAGACCTGCCAATCTTTGGGTGGCCAGTTACTACAAATTAATGGTGCAGATGATCTGACATTC
ATC
TTACAAGCAATTTCCCATACCACCTCCCCGTTCTGGATTGGATTGCATCGGAAGAAGCCTGGCCAAC
CA
TGGCTATGGGAGAATGGAACTCCTTTGAATTTTCAATTCTTTAAGACCAGGGGCGTTTCTTTACAGCT
A
TATTCATCAGGCAACTGTGCATACCTTCAAGACGGAGCTGTGTTCGCTGAAAACTGCATTCTAATTGCA
TTC
AGCATATGTCAGAAGAAGACAAATCATTTGCAAATTTAG


Translation (363 aa):
MTFDDKMKPANDEPDQKSCGKKPKGLHLLSSPWWFPAAMTLVILCLVLSVTLIVQWTQLRQVSDLLKQYQ
A
NLTQQDRILEGQMLAQQKAENTSQESKKELKGKIDTLTQKLNEKSKEQEELLQKNQNLQEALQRAANSS

E
ESQRELKGKIDTITRKLDEKSKEQEELLQMIQNLQEALQRAANSSEESQRELKGKIDTLTLKLNEKSKE
Q
EELLQKNQNLQEALQRAANFS
GPCPQDWLWHKENCYLFHGPFSWEKNRQTCQSLGGQLLQINGADDLTF
I
LQAISHTTSPFWIGLHRKKPGQPWLWENGTPLNFQ
FFKTRGVSLQLYSSGNCAYLQDGAVFAENCILIA
F
SICQKKTNHLQI




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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