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Report for CCDS20316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20316.1 Public Mus musculus 6 Gmcl1 23 108 98 CCDS HistoryNCBI Gene:23885Re-query CCDS DB by CCDS ID:20316.1Re-query CCDS DB by GeneID:23885See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001185.13 ENSMUSP00000001185.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001185.13Link to Ensembl Protein Viewer:ENSMUSP00000001185.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001185Re-query CCDS DB by Protein ID:ENSMUSP00000001185
Original member Current member NCBI NM_011818.3 NP_035948.3 Accepted alive Link to Nucleotide Sequence:NM_011818.3Link to Protein Sequence:NP_035948.3Re-query CCDS DB by Nucleotide ID:NM_011818Re-query CCDS DB by Protein ID:NP_035948Link to BLAST:NP_035948.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035948.3 524 Q920G9 524 100% 0 0

Chromosomal Locations for CCDS 20316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 86692923 86693051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86697449 86697536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86700512 86700657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86704499 86704574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86707403 86707472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86710515 86710652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86711589 86711679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86714175 86714259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86717386 86717451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86717992 86718104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86721341 86721438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86722569 86722665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86726073 86726196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86732911 86733164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGGGCGCTCTCAGCAGCCGGGTGCTGCGGCCCGCAGGGCGCACAGAGCAGCCCGAACCCACGCCCGGGG
CTGGGGGCGCGGCCCGCAGGTCGGACGCCGGCGAAGATGCGGGCCACAGCTTCTGTTACTGTCCGGGCGG
CCGCAAGCGCAAGCGCAGCAGCGGCACATTCTGCTACTGTCACCCCGACTCCGAGACAGACGACGACGAG
GACGAGGGCGACGAGCAGCAGAGGCTGCTGAACACGCCGCGCAGGAAAAAATTAAAGAGCACATCAAAAT
ACATCTACCAAACGCTGTTTTTGAATGGTGAAAACAGTGACATTAAGATCTGTGCTCTAGGTGAAGAGTG
GAGCTTACACAAAATCTACTTATGTCAATCTGGCTACTTTTCTAGTATGTTCAGTGGTTCTTGGAAAGAA
TCCAGCATGAATATTATTGAACTGGAGATTCCTGACCAGAACATTGATATAGAAGCACTGCAGGTCGCAT
TTGGATCACTGTATCGAGATGACGTCTTAATAAAGCCCAGCAGGGTCGTTGCCATTTTGGCAGCAGCTTG
CATGCTGCAATTGGATGGTTTGATACAGCAGTGCGGTGAGACAATGAAGGAGACCATCTCTGTGAGAACT
GTGTGTGGCTATTACACATCGGCAGGGACCTATGGACTAGACTCTGTAAAGAAAAAGTGCCTCGAGTGGC
TGCTGAACAACCTCATGACTCACCAGAGTGTGGAGCTTTTCAAAGAACTCAGTATAAACGTCATGAAACA
GCTCATTGGTTCGTCTAACTTATTTGTGATGCAAGTGGAGATGGATGTATATACAGCTCTTAAAAAGTGG
ATGTTCCTTCAGCTGGTGCCTTCCTGGAATGGGTCTTTAAAGCAGCTTTTGACAGAAACAGATGTCTGGT
TTTCAAAGTGGAAAAAAGACTTTGAAGGGACGACTTTCCTTGAAACTGAGCAGGGAAAACCATTTGCGCC
CGTGTTCAGACATTTAAGGCTACAGTACATTATCAGTGATCTGGCTTCTGCAAGGATCATTGAGCAGGAT
TCTCTGGTACCTTCAGAATGGCTGGCGGCAGTGTATAAACAGCAGTGGCTGGCTATGCTACGGGCTGAAC
AAGACAGTGAAGTGGGGCCTCAAGAAATCAATAAAGAAGAACTTGAGGGAAACAGCATGAGGTGTGGTCG
AAAGCTTGCCAAAGATGGTGAGTACTGCTGGCGCTGGACAGGCTTCAATTTCGGCTTTGACCTCCTTGTG
ACTTACACCAATCGATACATCATTTTCAAACGCAATACGCTGAACCAGCCATGTAGTGGATCTGTCAGCT
TACAGCCTCGAAGGAGCATAGCATTTAGATTGCGCTTGGCTTCTTTTGACAGTAGTGGGAAACTCATATG
CAGTAGAGCAACTGGCTACCAAATACTGACGCTTGAAAAAGACCAGGAGCAAGTGGTGATGAACTTGGAC
AGCAGACTTCTGATCTTCCCTCTGTACATCTGCTGTAACTTCTTGTATATATCACCAGAAAAAAGAACTG
AGAGTAATCGTCACCCAGAAAACCCAGGACACTGA

Translation (524 aa):
MGALSSRVLRPAGRTEQPEPTPGAGGAARRSDAGEDAGHSFCYCPGGRKRKRSSGTFCYCHPDSETDDDE
DEGDEQQRLLNTPRRKKLKSTSKYIYQTLFLNGENSDIKICALGEEWSLHKIYLCQSGYFSSMFSGSWKE
SSMNIIELEIPDQNIDIEALQVAFGSLYRDDVLIKPSRVVAILAAACMLQLDGLIQQCGETMKETISVRT
VCGYYTSAGTYGLDSVKKKCLEWLLNNLMTHQSVELFKELSINVMKQLIGSSNLFVMQVEMDVYTALKKW
MFLQLVPSWNGSLKQLLTETDVWFSKWKKDFEGTTFLETEQGKPFAPVFRHLRLQYIISDLASARIIEQD
SLVPSEWLAAVYKQQWLAMLRAEQDSEVGPQEINKEELEGNSMRCGRKLAKDGEYCWRWTGFNFGFDLLV
TYTNRYIIFKRNTLNQPCSGSVSLQPRRSIAFRLRLASFDSSGKLICSRATGYQILTLEKDQEQVVMNLD
SRLLIFPLYICCNFLYISPEKRTESNRHPENPGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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