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Report for CCDS20226.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20226.1 Public Mus musculus 6 Fabp1 23 108 98 CCDS HistoryNCBI Gene:14080Re-query CCDS DB by CCDS ID:20226.1Re-query CCDS DB by GeneID:14080See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20226.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067492.7 ENSMUSP00000064655.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067492.7Link to Ensembl Protein Viewer:ENSMUSP00000064655.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067492Re-query CCDS DB by Protein ID:ENSMUSP00000064655
Original member Current member NCBI NM_017399.5 NP_059095.1 Accepted alive Link to Nucleotide Sequence:NM_017399.5Link to Protein Sequence:NP_059095.1Re-query CCDS DB by Nucleotide ID:NM_017399Re-query CCDS DB by Protein ID:NP_059095Link to BLAST:NP_059095.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059095.1 127 P12710 127 100% 0 0

Chromosomal Locations for CCDS 20226.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 71199927 71199993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71201608 71201780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71203087 71203179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71204904 71204954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGAACTTCTCCGGCAAGTACCAATTGCAGAGCCAGGAGAACTTTGAGCCATTCATGAAGGCAATAGGTC
TGCCCGAGGACCTCATCCAGAAAGGGAAGGACATCAAGGGGGTGTCAGAAATCGTGCATGAAGGGAAGAA
AATCAAACTCACCATCACCTATGGACCCAAAGTGGTCCGCAATGAGTTCACCCTGGGGGAGGAGTGCGAA
CTGGAGACCATGACTGGGGAAAAAGTCAAGGCAGTCGTCAAGCTGGAAGGTGACAATAAAATGGTGACAA
CTTTCAAAGGCATAAAGTCCGTGACTGAACTCAATGGAGACACAATCACCAATACCATGACATTGGGCGA
CATTGTCTACAAGAGAGTCAGCAAGAGAATTTAG

Translation (127 aa):
MNFSGKYQLQSQENFEPFMKAIGLPEDLIQKGKDIKGVSEIVHEGKKIKLTITYGPKVVRNEFTLGEECE
LETMTGEKVKAVVKLEGDNKMVTTFKGIKSVTELNGDTITNTMTLGDIVYKRVSKRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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