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Report for CCDS20187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20187.1 Public Mus musculus 6 Vmn1r22 23 108 98 CCDS HistoryNCBI Gene:171196Re-query CCDS DB by CCDS ID:20187.1Re-query CCDS DB by GeneID:171196See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20187.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000227650.1 ENSMUSP00000153802.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227650.1Link to Ensembl Protein Viewer:ENSMUSP00000153802.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227650Re-query CCDS DB by Protein ID:ENSMUSP00000153802
Original member Current member EBI ENSMUST00000228076.1 ENSMUSP00000154262.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228076.1Link to Ensembl Protein Viewer:ENSMUSP00000154262.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228076Re-query CCDS DB by Protein ID:ENSMUSP00000154262
Original member Current member EBI ENSMUST00000228322.1 ENSMUSP00000154301.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228322.1Link to Ensembl Protein Viewer:ENSMUSP00000154301.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228322Re-query CCDS DB by Protein ID:ENSMUSP00000154301
Original member Current member EBI ENSMUST00000228257.1 ENSMUSP00000154422.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228257.1Link to Ensembl Protein Viewer:ENSMUSP00000154422.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228257Re-query CCDS DB by Protein ID:ENSMUSP00000154422
Original member Current member NCBI NM_134178.1 NP_598939.1 Accepted alive Link to Nucleotide Sequence:NM_134178.1Link to Protein Sequence:NP_598939.1Re-query CCDS DB by Nucleotide ID:NM_134178Re-query CCDS DB by Protein ID:NP_598939Link to BLAST:NP_598939.1

Chromosomal Locations for CCDS 20187.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57900082 57900990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGTCTTCAATCAAGAATGTTCTTTATTTCCAATCTGGACTTGGAGTTCTAGCCAATATGTTTCTACTGT
TTTTTTATATTTTCATAATCCTAGGTCACAGACCTAAGCCCATGGACCTGATCTTATGTCAATTTTCCTT
TGTTCACATACTGATGTTCCTCACTGCAGGGGATATTTGGCTTTCAGACTTATTTGAGTCACTGAACATT
GAGAATGACTTCATATGTAAGGCAACTTTTTACACTGGTAGGGTGATGAGAGGACTCTCTATGTGCATCA
CATGCCTCCTGGGTGTGTTCCAGGCTGTCACTATCAGTCCCAGTACCTCACTGTTGGCAAAATTTAAGCA
TAAACTAAAAAAATACATCATCTATGCTGTTTTCTATATTTGGTTTCTTAATTTCTCGATCAATAGTCAC
ATGATAGTCTATGTTGGTGGTTTTAACAATAGGAGTGAGACCAACCAGATGAGAATCACTAAAACCTGTT
CACACTTTCCCATGAACAACATCATCAAGGAATTGATTTTAACAGTGATAACTTTAAAAGATGTGTTTCT
TGTAGGAGTCATGCTGACCACAAGTATATACATGGTGATTATCTTGTATAGACATCAAAGAAAATGCAAG
CATCTTCATAGCATCAGGCACCTGAGAACATCCCCTGAGAAAAAGGCCACACAGACCATCCTGCTGCTGC
TGGTTTTCTTTGTGGTCATGTACTGGGTGGACCTCATCATCTCATCCACCTCAGTCCTGTTGTGGAGGTA
TGACCCAATCATCCTGACTGTTCAGAAGTTTGTGGTGAATGTCTATCCCACAATAACTCCTTTGGTACAA
ATCAGTTCTGATAAGAGAATAATCAATGTGCTGAAAAACTTGTGGCTAAAATGCCACCAGACTGTTTAA

Translation (302 aa):
MSSIKNVLYFQSGLGVLANMFLLFFYIFIILGHRPKPMDLILCQFSFVHILMFLTAGDIWLSDLFESLNI
ENDFICKATFYTGRVMRGLSMCITCLLGVFQAVTISPSTSLLAKFKHKLKKYIIYAVFYIWFLNFSINSH
MIVYVGGFNNRSETNQMRITKTCSHFPMNNIIKELILTVITLKDVFLVGVMLTTSIYMVIILYRHQRKCK
HLHSIRHLRTSPEKKATQTILLLLVFFVVMYWVDLIISSTSVLLWRYDPIILTVQKFVVNVYPTITPLVQ
ISSDKRIINVLKNLWLKCHQTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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