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Report for CCDS20163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20163.1 Public Mus musculus 6 Inmt 23 108 98 CCDS HistoryNCBI Gene:21743Re-query CCDS DB by CCDS ID:20163.1Re-query CCDS DB by GeneID:21743See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20163.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003569.5 ENSMUSP00000003569.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003569.5Link to Ensembl Protein Viewer:ENSMUSP00000003569.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000003569Re-query CCDS DB by Protein ID:ENSMUSP00000003569
Original member Current member NCBI NM_009349.3 NP_033375.1 Accepted alive Link to Nucleotide Sequence:NM_009349.3Link to Protein Sequence:NP_033375.1Re-query CCDS DB by Nucleotide ID:NM_009349Re-query CCDS DB by Protein ID:NP_033375Link to BLAST:NP_033375.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033375.1 264 P40936 264 100% 0 0

Chromosomal Locations for CCDS 20163.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 55170848 55171277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55173286 55173493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55174827 55174983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGGAGGGCAAGGTATACATAGGAGGTGAGGACTATGAAAAAGAGTTCACTCCCAAAGACTACCTGACCA
CC
TACTACAGCTTCCACTCTGGCCCTGTGGCAGAGCAGGAAATCGTAAAGTTTAGCCTGCAGAACCTCTA
C
CAGACCTTCTCTACAGGAGGTGTAGGGGGCGACGTCCTGATCGACATTGGCTCTGGCCCTACCATCTAC
CAG
CTGCTTTCAGCATGCGAGGTCTTCCGGGAGATCATTGTCACTGACTACACCCCGCAGAACCTGCAGG
AG
CTGCAGAAGTGGCTGAAGAAAGAGCCAGGAGCCTACGACTGGTCCTCCATAGTGCAACATGCATGTGA
G
CTGGAGGGAGACAGAAGCAGGTGGCAGGAGAAGGAAGCCAAGCTCAGAAGGACAGTCACTCGTGTCCTG
AGG
TGTGATGTGACCAAGACACCCCCGCTGGGGTCAGCTCAGGTGCCTCTGGCTGACTGCGTGCTGACCT
TT
CTGGCCATGGAGTGTGCCTGCCCTGATATAGATACCTACCGGGCAGCCTTGCGCAGACTGGCCGGCCT
G
CTGAAACCAGGAGGGCACCTGGTGACCCTGGTTACTCTGCGCTTCCAGCACTATATGGTGGGCCCCAAG
AAG
TTCTCTGGGGTCTACCTAGAGAAGGAGGTGGTGGAGAAGGCTATTCAAGATGCTGGCTGTCAGGTGC
TG
AAGTGCAACTGCGTCTCCCTCAGCTACTCGGAGGCTTACTGCTCCCACGACGGTTTGTGCTTTGTGGT
G
GCCCGGAAGGGTCCCAGTGCCTGA


Translation (264 aa):
MEGKVYIGGEDYEKEFTPKDYLTTYYSFHSGPVAEQEIVKFSLQNLYQTFSTGGVGGDVLIDIGSGPTIY
Q
LLSACEVFREIIVTDYTPQNLQELQKWLKKEPGAYDWSSIVQHACELEGD
RSRWQEKEAKLRRTVTRVL
R
CDVTKTPPLGSAQVPLADCVLTFLAMECACPDIDTYRAALRRLAGLLKPGGHLVTLVTLRFQHYMVGPK
K
FSGVYLEKEVVEKAIQDAGCQVLKCNCVSLSYSEAYCSHDGLCFVVARKGPSA




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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