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Report for CCDS19885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19885.1 Public Mus musculus 5 Hsph1 23 108 98 CCDS HistoryNCBI Gene:15505Re-query CCDS DB by CCDS ID:19885.1Re-query CCDS DB by GeneID:15505See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000202361.3 ENSMUSP00000144413.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202361.3Link to Ensembl Protein Viewer:ENSMUSP00000144413.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202361Re-query CCDS DB by Protein ID:ENSMUSP00000144413
Original member Current member EBI ENSMUST00000201452.3 ENSMUSP00000144654.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201452.3Link to Ensembl Protein Viewer:ENSMUSP00000144654.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201452Re-query CCDS DB by Protein ID:ENSMUSP00000144654
Original member Current member NCBI NM_013559.2 NP_038587.2 Accepted alive Link to Nucleotide Sequence:NM_013559.2Link to Protein Sequence:NP_038587.2Re-query CCDS DB by Nucleotide ID:NM_013559Re-query CCDS DB by Protein ID:NP_038587Link to BLAST:NP_038587.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038587.2 858 Q61699-1 858 100% 0 0

Chromosomal Locations for CCDS 19885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 149617507 149617710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149618387 149618548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149618746 149618865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149618961 149619068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149619877 149620002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149620546 149620683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149623465 149623596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149624969 149625177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149627255 149627388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149627536 149627642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149629201 149629429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149629787 149630031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149630339 149630472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149630760 149630859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149631387 149631509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149632034 149632174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149633830 149633887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149635970 149636076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGTCGGTGGTTGGGCTAGACGTAGGCTCACAGAGCTGCTACATTGCGGTGGCGCGGGCCGGGGGCATCG
AG
ACCATCGCCAACGAGTTCAGCGACCGCTGCACCCCGTCAGTCATATCATTTGGATCAAAAAACAGAAC
A
ATTGGAGTTGCAGCCAAAAACCAGCAAATCACTCATGCAAACAATACGGTCTCTAGCTTTAAGAGATTT
CAT
GGCAGAGCATTCAATGACCCCTTCATTCAGAAGGAAAAGGAGAACCTGAGCTATGATTTGGTCCCAA
TG
AAAAATGGTGGCGTGGGAATAAAGGTCATGTACATGGATGAAGAACATTTCTTCAGTGTGGAGCAGAT
A
ACAGCCATGCTGCTGACTAAGTTAAAGGAAACTGCAGAAAACAACCTCAAGAAGCCAGTGACAGACTGT
GTC
ATCTCAGTCCCATCCTTCTTCACAGATGCTGAGCGAAGGTCTGTGCTGGATGCTGCGCAGATTGTGG
GC
TTGAACTGCTTGCGGCTCATGAATGACATGACGGCTGTTGCTTTGAATTATGGGATTTATAAGCAAGA
T
CTCCCGAATGCCGAGGAGAAGCCACGGGTGGTGGTGTTTGTTGACATGGGACACTCATCTTTCCAAGTG
TCT
GCCTGTGCTTTTAACAAAGGAAAACTGAAGGTTCTAGGCACAGCTTTTGATCCCTTCTTAGGAGGAA
AG
AACTTTGATGAGAAGCTAGTAGAACATTTTTGTGCTGAATTTAAAACCAAGTACAAATTGGATGCAAA
A
TCCAAAATTCGAGCCCTCCTTCGTCTCCATCAGGAGTGTGAAAAGTTGAAAAAGCTCATGAGTTCTAAC
AGC
ACGGACCTGCCGCTGAACATCGAGTGCTTTATGAATGACAAGGATGTCTCTGGGAAGATGAACAGGT
CA
CAGTTTGAAGAACTGTGTGCTGAGCTCCTGCAAAAAATAGAGGTCCCCCTTCACTCGTTGATGGCACA
G
ACTCAGCTCAAGGCTGAAGATGTGAGTGCCATTGAGATAGTGGGAGGTGCCACAAGAATCCCAGCTGTG
AAA
GAAAGAATTGCCAAGTTCTTTGGAAAAGATGTCAGCACCACGCTCAATGCAGACGAAGCTGTGGCCA
GA
GGCTGTGCACTGCAGTGTGCAATTCTTTCTCCGGCATTTAAAGTTAGAGAGTTCTCTGTCACCGATGC
A
GTTCCTTTTCCAATATCTCTGGTCTGGAACCACGACTCGGAAGAAACGGAAGGTGTGCACGAGGTGTTC
AGT
CGGAACCATGCTGCTCCTTTCTCCAAAGTGCTCACCTTCCTGAGAAGGGGGCCCTTTGAGCTAGAAG
CT
TTCTATTCTGACCCTCAAGGAGTTCCATATCCAGAAGCAAAAATAGGCCGTTTTGTTGTTCAGAATGT
T
TCTGCACAGAAAGATGGAGAGAAGTCGAGAGTGAAGGTCAAAGTGCGTGTGAACACACATGGCATCTTC
ACC
ATCTCCACGGCTTCCATGGTGGAGAAGGTCCCGACCGAGGAAGAGGATGGCTCCTCTCTCGAGGCAG
AC
ATGGAATGTCCAAACCAGAGGCCAACAGAAAGCTCGGATGTGGATAAAAATATCCAGCAAGACAACAG
T
GAAGCTGGAACACAGCCCCAGGTACAAACTGATGGTCAACAAACCTCACAGTCTCCCCCTTCACCTGAA
CTT
ACCTCAGAAGAAAGCAAAACCCCAGATGCTGACAAAGCAAATGAAAAGAAAGTTGATCAGCCTCCAG
AA
GCCAAGAAACCTAAAATAAAGGTGGTAAATGTTGAGCTGCCTGTAGAAGCCAACTTGGTATGGCAGTT
A
GGGAGAGACCTTCTTAACATGTATATTGAGACAGAGGGCAAGATGATCATGCAAGACAAGCTGGAGAAG
GAG
CGGAACGACGCCAAGAACGCCGTGGAGGAGTGTGTATATGAGTTCAGGGACAAGCTATGTGGACCAT
AT
GAGAAATTCATATGTGAGCAGGAACATGAGAAGTTCTTGAGGCTTCTAACAGAGACGGAAGACTGGCT
G
TATGAGGAAGGGGAGGACCAGGCTAAGCAGGCATACATTGACAAGTTGGAAGAGCTGATGAAAATGGGC
ACT
CCTGTTAAAGTCAGATTTCAAGAAGCTGAGGAACGACCGAAAGTGTTGGAGGAGCTGGGGCAGCGCC
TG
CAGCACTATGCCAAGATTGCAGCGGACTTCAGAGGCAAGGATGAGAAATACAACCACATTGATGAATC
A
GAAATGAAGAAGGTTGAGAAGTCTGTTAATGAGGTGATGGAGTGGATGAATAATGTCATGAATGCTCAG
GCT
AAAAGAAGTCTTGATCAAGACCCTGTTGTTCGAACTCATGAAATCAGAGCGAAGGTCAAGGAATTGA
AC
AATGTTTGTGAACCTGTTGTAACTCAACCCAAACCAAAAATCGAGTCACCTAAACTGGAGAGAACTCC
A
AATGGCCCAAATATTGACAAGAAAGAAGATTTAGAAGGCAAAAATAATCTTGGTGCTGAAGCTCCGCAT
CAG
AATGGTGAATGCCACCCTAATGAGAAGGGCTCTGTCAACATGGACCTGGACTAG


Translation (858 aa):
MSVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRF
H
GRAFNDPFIQKEKENLSYDLVPMKNGGVGIK
VMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDC
V
IS
VPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYGIYKQDLPNAEEKPRVVVFVDMGHSSFQV
S
ACAFNKGKLK
VLGTAFDPFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSN
S
TDLPLNIECFMNDKDVSGKMN
RSQFEELCAELLQKIEVPLHSLMAQTQLKAEDVSAIEIVGGATRIPAV
K
ERIAKFFGKDVSTTLNADEAVARGCALQ
CAILSPAFKVREFSVTDAVPFPISLVWNHDSEETEGVHEVF
S
RNHAAPFSKVLTFLRRGPFELEAFYSDPQGVPYPEAKI
GRFVVQNVSAQKDGEKSRVKVKVRVNTHGIF
T
ISTASMVEKVPTEEEDGSSLEADMECPNQRPTESSDVD
KNIQQDNSEAGTQPQVQTDGQQTSQSPPSPE
L
TSEESKTPDADK
ANEKKVDQPPEAKKPKIKVVNVELPVEANLVWQLGRDLLNMYIETEGKMIMQDKLEK
E
RNDAKNAVEECVYEFRDKLCGPYEKFICEQ
EHEKFLRLLTETEDWLYEEGEDQAKQAYIDKLEELMKMG
T
PVKVRFQEAEERPKVLEELGQRLQHYAKIAADFRGK
DEKYNHIDESEMKKVEKSVNEVMEWMNNVMNAQ
A
KRSLDQDPVVRTHEIRAKVK
ELNNVCEPVVTQPKPKIESPKLERTPNGPNIDKKEDLEGKNNLGAEAPH
Q
NGECHPNEKGSVNMDLD




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser