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Report for CCDS19428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19428.1 Public Mus musculus 5 Naaa 23 108 98 CCDS HistoryNCBI Gene:67111Re-query CCDS DB by CCDS ID:19428.1Re-query CCDS DB by GeneID:67111See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19428.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113102.9 ENSMUSP00000108726.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113102.9Link to Ensembl Protein Viewer:ENSMUSP00000108726.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113102Re-query CCDS DB by Protein ID:ENSMUSP00000108726
Original member Current member NCBI NM_025972.4 NP_080248.2 Accepted alive Link to Nucleotide Sequence:NM_025972.4Link to Protein Sequence:NP_080248.2Re-query CCDS DB by Nucleotide ID:NM_025972Re-query CCDS DB by Protein ID:NP_080248Link to BLAST:NP_080248.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080248.2 362 Q9D7V9 362 100% 0 0

Chromosomal Locations for CCDS 19428.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92259556 92259631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92261352 92261380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92262509 92262575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92263410 92263472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92263591 92263763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92265081 92265157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92268042 92268132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92272444 92272570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92276919 92277083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92277912 92278132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGGGGACCCTAGCCACCAGGGCCGCGTGCCATGGGGCACACCTGGCCCTGGCTCTGTTGCTGCTACTGT
CGCTGTCCGGTCCCTGGCTGTCGGCTGTCGTCCCCGGGACTCCGCCTCTCTTCAACGTCAGTCTGGACGC
GGCCCCGGAGCAGCGCTGGCTGCCGATGCTGCGGCACTACGACCCAGACTTCTTGCGCACCGCGGTGGCG
CAGGTCATTGGCGACAGGGTTCCCCAGTGGGTACTCGGGATGGTCGGAGAAATTGTGTCGAAGGTGGAGA
GCTTCCTGCCTCAGCCCTTCACCGACGAGATCCGCAGCATCTGTGACTCGCTCAACCTCAGCCTGGCTGA
CGGTATCTTGGTCAACCTGGCCTACGAGGCTTCCGCATTCTGCACCAGTATTGTGGCCCAAGACTCCCAA
GGCCATATTTACCACGGCCGGAACCTGGACTATCCTTTTGGAAAAATCTTACGAAAGCTGACAGCGAACG
TGCAGTTTATAAAGAATGGGCAGATTGCATTCACTGGGACCACTTTTGTTGGCTATGTAGGACTGTGGAC
AGGCCAAAGTCCACACAAGTTTACAATTTCTGGTGATGAACGAGATAAAGGCTGGTGGTGGGAGAATATG
ATCGCGGCGCTTTCTCTGGGACACTCCCCCATCAGCTGGCTTATCCGCAAAACCCTGAGTGAGTCAGAAA
GCTTCGAAGCAGCTGTCTACACGCTGGCCAAGACTCCCCTCATTGCTGACGTTTATTACATTGTTGGGGG
TACATCGCCCAAGGAGGGAGTAGTCATCACCAGGGACCGAGGTGGCCCGGCAGACATTTGGCCTCTTGAC
CCTCTGAATGGAGAGTGGTTCCGAGTTGAGACAAATTATGACCATTGGAAGCCTGCACCCAAGGTGGATG
ACCGAAGAACACCAGCCATCAAAGCCCTAAATGCTACAGGGCAAGCTCACCTCAATCTGGAGACCCTCTT
CCAGGTTTTATCCCTGTTTCCTGTTTATAACAACTACACAATTTATACTACAGTGATGAGCGCTGCCGAG
CCCGACAAGTACCTGACCATGATCAGAAACCCGAGCTGA

Translation (362 aa):
MGTLATRAACHGAHLALALLLLLSLSGPWLSAVVPGTPPLFNVSLDAAPEQRWLPMLRHYDPDFLRTAVA
QVIGDRVPQWVLGMVGEIVSKVESFLPQPFTDEIRSICDSLNLSLADGILVNLAYEASAFCTSIVAQDSQ
GHIYHGRNLDYPFGKILRKLTANVQFIKNGQIAFTGTTFVGYVGLWTGQSPHKFTISGDERDKGWWWENM
IAALSLGHSPISWLIRKTLSESESFEAAVYTLAKTPLIADVYYIVGGTSPKEGVVITRDRGGPADIWPLD
PLNGEWFRVETNYDHWKPAPKVDDRRTPAIKALNATGQAHLNLETLFQVLSLFPVYNNYTIYTTVMSAAE
PDKYLTMIRNPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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