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Report for CCDS19121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19121.1 Public Mus musculus 5 Tmub1 23 108 98 CCDS HistoryNCBI Gene:64295Re-query CCDS DB by CCDS ID:19121.1Re-query CCDS DB by GeneID:64295See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030799.14 ENSMUSP00000030799.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030799.14Link to Ensembl Protein Viewer:ENSMUSP00000030799.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030799Re-query CCDS DB by Protein ID:ENSMUSP00000030799
Original member Current member EBI ENSMUST00000115033.7 ENSMUSP00000110685.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115033.7Link to Ensembl Protein Viewer:ENSMUSP00000110685.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115033Re-query CCDS DB by Protein ID:ENSMUSP00000110685
Original member Current member NCBI NM_022418.3 NP_071863.1 Accepted alive Link to Nucleotide Sequence:NM_022418.3Link to Protein Sequence:NP_071863.1Re-query CCDS DB by Nucleotide ID:NM_022418Re-query CCDS DB by Protein ID:NP_071863Link to BLAST:NP_071863.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071863.1 245 Q9JMG3-1 245 100% 0 0

Chromosomal Locations for CCDS 19121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 24445922 24446273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24446534 24446919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGCCTTGATTGAAGGCGTAGGCGATGAGGTGACTGTCCTTTTTGCGGTGCTTGCTTGCCTTCTGGTGC
TGGCCCTCGCCTGGGTCTCAACACATACCACTGAGAGTACAGACCCCCAACCACAGCCGCCGGGGACCAC
AACACCAGCACAGCCCAGTGAAGCCATGTCAGCCTCTGACAGCATCAGAGAGGAGGCCCCAGGGGCTGAG
AGTCCCAGCCTGAGACACAGAGGTCCATCTGCACAGCCAGAGCCTGACACAGGGGTCACAGCATCAACAC
CTCCAGACTCTCCGCAGGAACCCCTACTTCTACGGTTGAAATTTCTCAATGACTCTGAGCAGGTAGCCAG
GGCCTGGCCTCAGGACACCATTGGCTCCTTAAAAAGGACCCAGTTTCCAGGCCAGGAACAGCAGGTTCGG
CTCATCTACCAAGGTCAACTGCTAGGAGACGACACTCAGACACTAGGCAGTCTCCACCTGCCCCCCAACT
GCGTTCTCCACTGCCACGTGTCCACGAGAGTCGGTCCCCCACATCCTCCCTGCCCACCGGGGTCAGAGCC
CGGCCCCTCCGGGCTGGAAATCGGCAGCCTTCTGTTGCCCCTGCTGCTTCTGCTGCTGCTCCTGCTCTGG
TACTGCCAGATCCAGTACCGGCCCTTCTTTCCCCTGACCGCTACCCTGGGTCTGGCCGGCTTCACCCTGC
TCCTCAGTCTCCTGGCCTTTGCCATGTATCGGCCGTAG

Translation (245 aa):
MALIEGVGDEVTVLFAVLACLLVLALAWVSTHTTESTDPQPQPPGTTTPAQPSEAMSASDSIREEAPGAE
SPSLRHRGPSAQPEPDTGVTASTPPDSPQEPLLLRLKFLNDSEQVARAWPQDTIGSLKRTQFPGQEQQVR
LIYQGQLLGDDTQTLGSLHLPPNCVLHCHVSTRVGPPHPPCPPGSEPGPSGLEIGSLLLPLLLLLLLLLW
YCQIQYRPFFPLTATLGLAGFTLLLSLLAFAMYRP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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