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Report for CCDS18677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18677.1 Public Mus musculus 4 Trim62 23 108 98 CCDS HistoryNCBI Gene:67525Re-query CCDS DB by CCDS ID:18677.1Re-query CCDS DB by GeneID:67525See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18677.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035667.8 ENSMUSP00000039121.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035667.8Link to Ensembl Protein Viewer:ENSMUSP00000039121.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035667Re-query CCDS DB by Protein ID:ENSMUSP00000039121
Original member Current member NCBI NM_178110.3 NP_835211.1 Accepted alive Link to Nucleotide Sequence:NM_178110.3Link to Protein Sequence:NP_835211.1Re-query CCDS DB by Nucleotide ID:NM_178110Re-query CCDS DB by Protein ID:NP_835211Link to BLAST:NP_835211.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835211.1 475 Q80V85 475 100% 0 0

Chromosomal Locations for CCDS 18677.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 128884170 128884577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128896820 128896915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128900546 128900802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128902473 128902588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128909036 128909586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGCGTGCAGCCTCAAGGACGAGCTGCTGTGCTCCATCTGCCTGAGCATCTACCAGGACCCGGTGAGCC
TG
GGCTGCGAGCACTACTTCTGCCGCCGCTGCATCACCGAGCACTGGGTGCGGCAGGAGGCTCAGGGCGC
C
CGCGACTGCCCGGAGTGCCGGCGCACGTTCGCCGAGCCCGCGCTCGCGCCCAGCCTCAAGCTGGCCAAC
ATC
GTGGAGCGCTACAGCGCCTTCCCGCTGGACGCCATCCTCAACGCGCGCCGAGCCGCGCGACCCTGCC
AG
GCTCACGACAAGGTCAAGCTCTTCTGCCTCACGGACCGCGCACTGCTCTGCTTCTTCTGTGATGAGCC
C
GCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGAGTTGCAGAGAGAACTGAAG
GAG
CAGCTTCAGGCCCTTCAGGACAGCGAGCGGGAACACACGGAGGCGCTGCAGCTCCTCAAGCGACAGT
TG
GCAGAGACCAAGTCCTCTACCAAGAGCCTGCGGACCACCATCGGGGAAGCCTTTGAGCGGCTGCACCG
G
CTACTTCGAGAGCGACAGAAGGCCATGCTGGAGGAACTGGAGGCCGACACAGCCCGCACACTGACGGAC
ATT
GAGCAGAAGGTCCAGCGTTACAGCCAGCAACTACGAAAGGTGCAAGAGGGGGCCCAGATCCTGCAGG
AG
CGGCTGGCAGAGACTGACCGCCACACCTTCCTTGCAGGAGTGGCCTCCCTGTCTGAGAGGCTCAAGGG
G
AAGATTCATGAGACCAACCTAACGTACGAAGACTTCCCGACCTCCAAGTACACAGGCCCCCTGCAGTAC
ACC
ATCTGGAAATCGCTTTTCCAGGACATCCATCCAGTGCCAGCTGCCCTGACCATGGACCCAGGCACTG
CC
CACCAGCGCCTGATCCTGTCCGATGACTGCACCATCGTGGCCTACGGGAACCTACACCCACAACCACT
G
CAGGACTCACCAAAGCGCTTTGACGTAGAGGTGTCGGTGCTGGGCTCTGAAGCCTTCAGTAGCGGTGTC
CAC
TACTGGGAGGTGGTGGTGGCGGAGAAGACCCAGTGGGTGATTGGGCTGGCCCATGAGGCTGCCAGTC
GC
AAAGGCAGCATCCAGATTCAGCCTAGCCGCGGCTTCTACTGCATCGTTATGCATGACGGTAACCAGTA
C
AGCGCCTGCACAGAGCCCTGGACTAGGCTCAACGTCCGTGACAAGCTTGACAAGGTGGGCGTCTTCCTG
GAC
TATGACCAGGGCCTCCTCATCTTCTACAACGCCGATGACATGTCCTGGCTCTACACCTTCCGAGAGA
AG
TTTCCTGGCAAGCTCTGCTCCTACTTCAGCCCCGGCCAGAGCCACGCCAATGGCAAGAACGTCCAACC
A
CTGCGGATCAACACCGTCCGCATCTAA


Translation (475 aa):
MACSLKDELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRRTFAEPALAPSLKLAN
I
VERYSAFPLDAILNARRAARPCQAHDKVKLFCLTDRALLCFFCDEPALHEQHQVTGIDDAFEELQ
RELK
E
QLQALQDSEREHTEALQLLKRQLAETK
SSTKSLRTTIGEAFERLHRLLRERQKAMLEELEADTARTLTD
I
EQKVQRYSQQLRKVQEGAQILQERLAETDRHTFLAGVASLSE
RLKGKIHETNLTYEDFPTSKYTGPLQY
T
IWKSLFQDIHP
VPAALTMDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRFDVEVSVLGSEAFSSGV
H
YWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMHDGNQYSACTEPWTRLNVRDKLDKVGVFL
D
YDQGLLIFYNADDMSWLYTFREKFPGKLCSYFSPGQSHANGKNVQPLRINTVRI




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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