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Report for CCDS18057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18057.1 Public Mus musculus 4 Ube2r2 23 108 98 CCDS HistoryNCBI Gene:67615Re-query CCDS DB by CCDS ID:18057.1Re-query CCDS DB by GeneID:67615See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18057.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040008.3 ENSMUSP00000038813.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040008.3Link to Ensembl Protein Viewer:ENSMUSP00000038813.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000040008Re-query CCDS DB by Protein ID:ENSMUSP00000038813
Original member Current member NCBI NM_026275.4 NP_080551.1 Accepted alive Link to Nucleotide Sequence:NM_026275.4Link to Protein Sequence:NP_080551.1Re-query CCDS DB by Nucleotide ID:NM_026275Re-query CCDS DB by Protein ID:NP_080551Link to BLAST:NP_080551.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080551.1 238 Q6ZWZ2 238 100% 0 0

Chromosomal Locations for CCDS 18057.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41136070 41136246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41174041 41174127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41183245 41183342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41189152 41189286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41190605 41190824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGCCCAGCAGCAGATGACCAGCTCGCAGAAAGCCCTGATGCTTGAGCTGAAATCCCTGCAGGAGGAAC
CGGTGGAGGGCTTCCGGATCACCCTGGTGGATGAGTCCGACCTCTACAACTGGGAGGTGGCCATCTTCGG
ACCCCCTAACACCCTCTACGAAGGCGGCTACTTCAAGGCACATATTAAGTTTCCTATTGATTACCCATAT
TCACCACCTACCTTCAGATTCTTGACCAAAATGTGGCACCCCAACATTTATGAGAATGGAGATGTATGCA
TTTCAATTCTTCATCCGCCTGTAGATGACCCGCAGAGTGGAGAGCTACCCTCTGAAAGGTGGAACCCTAC
TCAGAACGTTAGGACTATCCTGTTAAGTGTGATCTCACTGCTTAATGAGCCCAACACCTTTTCTCCAGCC
AATGTGGATGCTTCAGTCATGTTCAGGAAATGGAGGGACAGCAAAGGAAAAGACAAGGAATATGCTGAGA
TCATTAGGAAACAGGTCTCAGCCACTAAAGCTGAGGCGGAGAAGGATGGAGTGAAGGTCCCCACAACCCT
GGCAGAATACTGCATCAAAACTAAAGTGCCTTCCAATGACAACAGCTCAGATTTGCTTTATGACGACTTG
TATGACGACGACATTGATGATGAAGATGAAGAGGAAGAAGATGCCGACTGTTATGATGATGATGATTCTG
GAAATGAGGAGTCGTGA

Translation (238 aa):
MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPY
SPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPA
NVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDGVKVPTTLAEYCIKTKVPSNDNSSDLLYDDL
YDDDIDDEDEEEEDADCYDDDDSGNEES


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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