NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17988.1 Public Mus musculus 4 Ripk2 23 108 98 CCDS HistoryNCBI Gene:192656Re-query CCDS DB by CCDS ID:17988.1Re-query CCDS DB by GeneID:192656See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17988.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037035.11 ENSMUSP00000038833.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037035.11Link to Ensembl Protein Viewer:ENSMUSP00000038833.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037035Re-query CCDS DB by Protein ID:ENSMUSP00000038833
Original member Current member NCBI NM_138952.4 NP_620402.1 Accepted alive Link to Nucleotide Sequence:NM_138952.4Link to Protein Sequence:NP_620402.1Re-query CCDS DB by Nucleotide ID:NM_138952Re-query CCDS DB by Protein ID:NP_620402Link to BLAST:NP_620402.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620402.1 539 P58801 539 100% 0 0

Chromosomal Locations for CCDS 17988.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 16123554 16123891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16124425 16124586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16127621 16127714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16129023 16129109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16132777 16132862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16138074 16138235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16139205 16139254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16151917 16152074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16155035 16155190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16158277 16158430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16163224 16163396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGAACGGGGACGCCATCTGCAGCGCGCTACCCCCCATCCCGTACCACAAGCTCGCCGACCTGCACTACC
TCAGCCGGGGCGCCTCTGGCACGGTCTCGTCGGCACGACACGCAGACTGGCGCGTGCGGGTGGCAGTGAA
GCACCTACACATCCACACGCCGCTGCTCGACAGTGAAAGAAATGATATCTTACGAGAAGCCGAAATATTA
CATAAAGCAAGATTTAGTTACATTCTTCCAATTTTGGGAATTTGCAATGAGCCTGAATTTTTGGGCATAG
TTACTGAATACATGCCAAATGGATCATTAAATGAGCTTCTACACAGAAAAACTGAATATCCTGATATTGC
ATGGCCATTGAGATTCCGCATCCTGCATGAAATTGCTCTTGGTGTAAATTATCTGCACAATATGAACCCC
CCTCTGCTTCATCATGACCTAAAGACTCAGAATATCTTGTTGGATAATGAATTTCATGTTAAGATTGCAG
ATTTTGGTTTATCAAAATGGCGCATGATGTCACTCTCTCAATCACGAAGTTACAAATCTGCACCCGAAGG
AGGAACAATCATCTATATGCCACCTGAGAACTATGAGCCAGGACAGAAATCAAGGGCCAGTGTGAAGCAT
GATATATACAGCTATGCAGTTATCATGTGGGAAGTGTTATCCAGAAAACAGCCTTTTGAAGAGGTCACCA
ATCCTTTGCAGATCATGTACAGTGTGTCCCAGGGACATCGACCTGACACCAGTGAGGAGAATTTGCCATT
TGATATACCTCATCGAGGTCTCATGATCTCTCTAATACAGAGTGGATGGGCGCAAAACCCAGATGAAAGA
CCATCCTTTTTGAAATGCTTAATAGAACTTGAACCAGTTCTGAGAACATTTGAAGACATAACTTTCCTTG
AGGCTGTTATTCAGCTAAAGAAAGCAAAGATACAGAGTTCCTCAAGTACTATTCACTTATGTGATAAGAA
AATGGATTTATCGCTAAACATACCTGCAAATCATCCCCCACAGGAGGAATCGTGTGGATCCTCTCTGCTC
TCTAGAAACACTGGTTCTCCTGGACCCTCCAGATCCCTATCAGCTCCTCAAGACAAGGGATTTTTATCTG
GAGCACCTCAAGACTGCTCTTCGTTGAAGGCACACCACTGTCCTGGAAACCACAGCTGGGATGGTATCGT
TTCTGTACCACCAGGGGCAGCCTTCTGTGATCGCAGGGCCTCCTCGTGTTCCTTGGCTGTAATAAGTCCA
TTCTTGGTTGAGAAAGGTTCAGAGCGCCCACCAATTGGTATAGCCCAACAGTGGATCCAGAGTAAGAGGG
AAGCCATTGTGAGCCAGATGACTGAAGCCTGCCTTAACCAATCGCTGGACGCCCTTCTGTCTCGTGACCT
GATCATGAAGGAGGACTATGAACTCATTAGCACCAAACCTACAAGGACCTCAAAAGTCAGACAGCTGCTA
GATACGTCTGACATCCAAGGAGAAGAGTTTGCCAAAGTTGTAGTGCAGAAGTTGAAAGATAACAAGCAGC
TGGGGCTGCAGCCTTACCCAGAAGTACCTGTGCTTTCCAAAGCACCGCCTTCAAATTTCCCTCAGAATAA
AAGCTTGTAA

Translation (539 aa):
MNGDAICSALPPIPYHKLADLHYLSRGASGTVSSARHADWRVRVAVKHLHIHTPLLDSERNDILREAEIL
HKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEYPDIAWPLRFRILHEIALGVNYLHNMNP
PLLHHDLKTQNILLDNEFHVKIADFGLSKWRMMSLSQSRSYKSAPEGGTIIYMPPENYEPGQKSRASVKH
DIYSYAVIMWEVLSRKQPFEEVTNPLQIMYSVSQGHRPDTSEENLPFDIPHRGLMISLIQSGWAQNPDER
PSFLKCLIELEPVLRTFEDITFLEAVIQLKKAKIQSSSSTIHLCDKKMDLSLNIPANHPPQEESCGSSLL
SRNTGSPGPSRSLSAPQDKGFLSGAPQDCSSLKAHHCPGNHSWDGIVSVPPGAAFCDRRASSCSLAVISP
FLVEKGSERPPIGIAQQWIQSKREAIVSQMTEACLNQSLDALLSRDLIMKEDYELISTKPTRTSKVRQLL
DTSDIQGEEFAKVVVQKLKDNKQLGLQPYPEVPVLSKAPPSNFPQNKSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH