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Report for CCDS17612.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17612.1 Public Mus musculus 3 Cers2 23 108 98 CCDS HistoryNCBI Gene:76893Re-query CCDS DB by CCDS ID:17612.1Re-query CCDS DB by GeneID:76893See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17612.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015858.11 ENSMUSP00000015858.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015858.11Link to Ensembl Protein Viewer:ENSMUSP00000015858.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000015858Re-query CCDS DB by Protein ID:ENSMUSP00000015858
Original member Current member NCBI NM_001320492.1 NP_001307421.1 Accepted alive Link to Nucleotide Sequence:NM_001320492.1Link to Protein Sequence:NP_001307421.1Re-query CCDS DB by Nucleotide ID:NM_001320492Re-query CCDS DB by Protein ID:NP_001307421Link to BLAST:NP_001307421.1
Original member Current member NCBI NM_029789.2 NP_084065.1 Accepted alive Link to Nucleotide Sequence:NM_029789.2Link to Protein Sequence:NP_084065.1Re-query CCDS DB by Nucleotide ID:NM_029789Re-query CCDS DB by Protein ID:NP_084065Link to BLAST:NP_084065.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307421.1 380 Q924Z4 380 100% 0 0
NP_084065.1 380 Q924Z4 380 100% 0 0

Chromosomal Locations for CCDS 17612.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95320063 95320235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95320642 95320759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95320942 95321060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95321190 95321247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95321336 95321386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95321575 95321667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95321831 95321959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95322127 95322233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95322320 95322473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95322649 95322789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGCTCCAGACCTTGTATGACTACTTCTGGTGGGAACGACTATGGCTGCCTGTGAACTTAACCTGGGCTG
ATCTAGAAGACAAAGATGGACGTGTCTATGCCAAAGCCTCAGATCTCTACATCACACTCCCCCTGGCCCT
GCTCTTTCTCGTCATTCGATACTTCTTTGAGCTTTATGTGGCAACACCCCTGGCTGCCCTCCTGAATGTT
AAGGAGAAAACCCGACTGCGGGCACCTCCCAATGCCACCTTGGAACATTTCTACCAGACCAGCGGCAAGC
AGCCCAAGCAGGTGGAGGTAGACCTTTTGTCACGGCAGAGTGGGCTCTCTGGACGCCAGGTAGAACGCTG
GTTCCGCCGCCGCCGCAACCAGGACAGGCCCAGTCTTCTCAAAAAGTTCCGAGAAGCCAGCTGGAGATTC
ACGTATTACCTAATTGCCTTTGTTGCTGGCATGGCTGTCACTGTGGATAAACCCTGGTTCTATGACTTAA
GGAAAGTTTGGGAGGGATATCCCATACAGAGCATCATCCCTTCTCAGTATTGGTACTACATGATTGAACT
TTCCTTCTACTGGTCCCTGCTCTTCAGCATTGCCTCTGATGTCAAGCGAAAGGATTTTAAGGAACAGATC
ATCCACCATGTGGCCACTATCATTCTCCTCTGCTTCTCCTGGTTTGCCAATTACGTCCGGGCAGGGACCC
TCATCATGGCTCTGCATGACGCTTCTGACTACCTGCTGGAGTCTGCCAAGATGTTTAACTACGCGGGATG
GAAGAACACCTGCAACAACCTCTTCATTGTGTTCGCCATCGTTTTCATCATCACTCGGCTGGTTATCATG
CCTTTCTGGATCCTACACTGCACGATGATATACCCACTGGAGCTCTACCCTGCCTTCTTTGGCTATTATT
TCTTCAATTTTATGATGGCAGTGCTACAGATGCTCCATATCTTCTGGGCCTACTTCATTCTGCGTATGGC
CCACAAGTTCATAACTGGAAAGCTGATAGAAGATGAACGCAGTGACAGAGAAGAAACAGAGAGTTCAGAG
GGGGAGGAGACTGCAGCTGGGGCAGGAGCAAAGAGCCGGCTCCTAGCTAATGGCCACCCCATCCTCAATA
ACAATCATCCTAAGAATGACTGA

Translation (380 aa):
MLQTLYDYFWWERLWLPVNLTWADLEDKDGRVYAKASDLYITLPLALLFLVIRYFFELYVATPLAALLNV
KEKTRLRAPPNATLEHFYQTSGKQPKQVEVDLLSRQSGLSGRQVERWFRRRRNQDRPSLLKKFREASWRF
TYYLIAFVAGMAVTVDKPWFYDLRKVWEGYPIQSIIPSQYWYYMIELSFYWSLLFSIASDVKRKDFKEQI
IHHVATIILLCFSWFANYVRAGTLIMALHDASDYLLESAKMFNYAGWKNTCNNLFIVFAIVFIITRLVIM
PFWILHCTMIYPLELYPAFFGYYFFNFMMAVLQMLHIFWAYFILRMAHKFITGKLIEDERSDREETESSE
GEETAAGAGAKSRLLANGHPILNNNHPKND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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