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Report for CCDS17443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17443.1 Public Mus musculus 3 Glt28d2 23 108 98 CCDS HistoryNCBI Gene:320302Re-query CCDS DB by CCDS ID:17443.1Re-query CCDS DB by GeneID:320302See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033643.5 ENSMUSP00000033643.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033643.5Link to Ensembl Protein Viewer:ENSMUSP00000033643.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033643Re-query CCDS DB by Protein ID:ENSMUSP00000033643
Original member Current member NCBI NM_177130.3 NP_796104.2 Accepted alive Link to Nucleotide Sequence:NM_177130.3Link to Protein Sequence:NP_796104.2Re-query CCDS DB by Nucleotide ID:NM_177130Re-query CCDS DB by Protein ID:NP_796104Link to BLAST:NP_796104.2

Chromosomal Locations for CCDS 17443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 85871667 85872164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGAAGAGAGTGTTTGTGACCGTCGGGACCACCAGTTTCGACGACCTCATCGCTCGAGTGGTTGCCCACG
AT
AGCGTTCAGATCCTCAAGAATCTGGGTTACAACCAACTTGTCCTCCAAATTGGTAGAGGCACTGTGGT
G
CCTGAGCCATTCAGTACTGAGTCATTCACTCTGGATGTTTACAGATATAAGGACTCTTTGAAAGAAGAC
CTT
CAGCAAGCCGACCTTGTCATTAGCCATGCAGGTGCAGGAAGCTGTTTGGAGAGTCTGGAGAAAGGCA
AA
CCACTTGTGGTAGTTGTGAATGAAAAGTTAATGAACAATCATCAGTTTGAACTGGCAAAGCAGTTGCA
C
AAAGAAGGCCATCTCTTCTACTGTACCTGCAGCATGCTTCCTGAGCTGTTACAGTCAATGGATTTATCA
ACA
TTGAAATGTTATCCTCCTGGACAGCCAGAGAAATTTTCTGCATTTTTGGATAAAGTTGTTGGATTAC
AA
AAATAA


Translation (165 aa):
MKRVFVTVGTTSFDDLIARVVAHDSVQILKNLGYNQLVLQIGRGTVVPEPFSTESFTLDVYRYKDSLKED
L
QQADLVISHAGAGSCLESLEKGKPLVVVVNEKLMNNHQFELAKQLHKEGHLFYCTCSMLPELLQSMDLS
T
LKCYPPGQPEKFSAFLDKVVGLQK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser