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Report for CCDS17241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17241.1 Public Mus musculus 3 Slc10a5 21 106 86 CCDS HistoryNCBI Gene:241877Re-query CCDS DB by CCDS ID:17241.1Re-query CCDS DB by GeneID:241877See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17241.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000078748 ENSMUSP00000077808 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078748Link to Ensembl Protein Viewer:ENSMUSP00000077808Re-query CCDS DB by Nucleotide ID:ENSMUST00000078748Re-query CCDS DB by Protein ID:ENSMUSP00000077808
Original member Current member EBI,WTSI OTTMUST00000130087 OTTMUSP00000069790 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000130087Link to Vega Protein Viewer:OTTMUSP00000069790Re-query CCDS DB by Nucleotide ID:OTTMUST00000130087Re-query CCDS DB by Protein ID:OTTMUSP00000069790
Original member Current member NCBI NM_001010834.2 NP_001010834.1 Accepted alive Link to Nucleotide Sequence:NM_001010834.2Link to Protein Sequence:NP_001010834.1Re-query CCDS DB by Nucleotide ID:NM_001010834Re-query CCDS DB by Protein ID:NP_001010834Link to BLAST:NP_001010834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010834.1 434 Q5PT54 434 100% 0 0

Chromosomal Locations for CCDS 17241.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 10334294 10335598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3Link to Vega Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGTCTGGCAATTTTTTTATATTTCTACTTTTGTTGGTGACCCCAGGAGAAGCGAAGAAGTCATTTCTCA
GT
TTTCTGAATATACAAAATACAGAAATGCTGTCCTTTACAAGGACGGAAGAAAACATCGTTGTAAGGTC
C
AGCTATAAAGACAAACAGCCTCACTCCAGCTACCTGCTCGTGAAGTTAGAGGATCCTAAAGTGCTGCAG
GTG
GTGAATGTGACCAAGACCTCCCTGGCTGTCACAGACTTTACCGTCAACCTGAAGACTTTCCCAGGAG
AG
ACCAATGTGACCCTGCAGCTCTGGGAGTCTGAAGGTAGGCAAACAACACTCATCGACGAGCTAAAGAA
T
GTCAGAGTGAGAGTGTTCAGACAGACGGACGACAGCCTCCTCCAGGCACCAATCCATGTCGATAGCTCC
ATC
TTCCTGCTTGTCTTATCGATGATCCTTTTAAATAAATGTGCCTTTGGCTGCAAGATTGAATTCCAGG
TG
CTTCAAACAGTGTGGAAGAGACCTTTGCCAATACTTCTTGGGGTGGTTATACAGTTTTTTCTTATGCC
A
TTCTGTGGCTTTCTCTTGTCTCAGATTTTGGGCTTGCCTAAGGCACAGGCTTTTGGATTTGTAATGACC
TGC
ACATGCCCAGGAGGAGGTGGGGGCTATCTCTTTGCTCTCCTTCTGGAAGGGGATGTCACTTTGGCCA
TT
TTGATGACTTGCACATCAACGTCCCTGGCCCTCATCATGATGCCTGTCAACTCATACTTTTACAGTCG
G
CTACTGGGCTTAGCAGGTGCATTTCACGTCCCTGTGTTAAAGATTGTGTCTACTCTTCTTTTCATACTT
ATG
CCAATGTCGACTGGTGTCATCATTAAACACAAGATGCCTGCGAAAGCAATCTGTTTAGAGAGAGTAG
TG
CGGCCTCTGAGCTTGACTTTAATGTTCGTGGGCATCTACTTGGCTTTCCGGATGGGACTAGTGTTTCT
G
AGAATGGCTAACCTAGAGGTGTTTCTATTGGGGCTTCTGGTTCCTGCACTGGGCCTTTTGTTTGGCTAT
TCC
TTGGCTAAAGTCTACTTGCTGCCTCTTCCTGTTTGCAAGACGGTTGCTCTCGAAACTGGGATGTTGA
AT
AGTTTCTTAGCTCTGGCCATCATTCAGCTTTCCTTTTCCCAGCCCAAGGCACACGAAGCCTCCGTAGC
C
CCCTTTACAGTAGCCATGTGTTCCAGCTGTGAAATGTTACTGCTCCTTCTGGTCTACAAGGCTAAGAGA
AGG
CCATCCCTTAGCACAGAATATGAAAAAACTCCTCTAGTTTAA


Translation (434 aa):
MSGNFFIFLLLLVTPGEAKKSFLSFLNIQNTEMLSFTRTEENIVVRSSYKDKQPHSSYLLVKLEDPKVLQ
V
VNVTKTSLAVTDFTVNLKTFPGETNVTLQLWESEGRQTTLIDELKNVRVRVFRQTDDSLLQAPIHVDSS
I
FLLVLSMILLNKCAFGCKIEFQVLQTVWKRPLPILLGVVIQFFLMPFCGFLLSQILGLPKAQAFGFVMT
C
TCPGGGGGYLFALLLEGDVTLAILMTCTSTSLALIMMPVNSYFYSRLLGLAGAFHVPVLKIVSTLLFIL
M
PMSTGVIIKHKMPAKAICLERVVRPLSLTLMFVGIYLAFRMGLVFLRMANLEVFLLGLLVPALGLLFGY
S
LAKVYLLPLPVCKTVALETGMLNSFLALAIIQLSFSQPKAHEASVAPFTVAMCSSCEMLLLLLVYKAKR
R
PSLSTEYEKTPLV




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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