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Report for CCDS16919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16919.1 Public Mus musculus 2 Bpifb2 23 108 98 CCDS HistoryNCBI Gene:66557Re-query CCDS DB by CCDS ID:16919.1Re-query CCDS DB by GeneID:66557See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16919.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028983.2 ENSMUSP00000028983.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028983.2Link to Ensembl Protein Viewer:ENSMUSP00000028983.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028983Re-query CCDS DB by Protein ID:ENSMUSP00000028983
Original member Current member NCBI NM_025631.3 NP_079907.2 Accepted alive Link to Nucleotide Sequence:NM_025631.3Link to Protein Sequence:NP_079907.2Re-query CCDS DB by Nucleotide ID:NM_025631Re-query CCDS DB by Protein ID:NP_079907Link to BLAST:NP_079907.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079907.2 462 Q8C1E1 462 100% 0 0

Chromosomal Locations for CCDS 16919.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153875906 153876023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153878441 153878534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153880038 153880142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153881143 153881289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153882610 153882670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153883562 153883622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153889097 153889188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153889384 153889572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153889796 153889849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153890404 153890574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153891091 153891158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153891280 153891325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153891946 153892009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153892337 153892413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153894989 153895030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGGCTAGGGCATGCAGTCTAGGCCTGCTTCTGCTGCTGTTGCTGCTGCTGCGGACTGTAGTCACTGTCT
CCTTGCCTGTCATTGTGGTCCGACTCAACAAGGCAGCATTGGATTATGTGTCGGACATTGGGAAAGCCCC
TCTCCAGCGGGCCCTGCAGGTCACTATCTCTGATTTCATGGATCCAAGTGGGGAGGTGCTTCAGTCTACC
AGGGTTCAGATTCTGGATGCCCACGTGCCCTTCTTCTACTTGAAGTTCATTGCTGGTTTTGGGGTACATT
TATCAGCCGCAGCCAATTTCACCATCAAAGTCTTTAGTGTCCCAGAGCCCATGGAGCTGGTGCTGCCTGT
AGACTTGCTGGCTGATGTGCACGTGGCCCGGGACTCTATTGGGACCCTTGTGCTCAGCGTCCCTGCCTGC
TCTTCCATCTTCAGTCCAGCCGGCATGCTGGATGGCAGTATCAGTACCTCCCAGGAGCTGCTCGACCGGG
TGCAGGAGCACATCAAAGCTGACCTAAACAACAAGCTGTGCTTGCATGTCTATGGCCTGGTCCAGGATCT
CAATGTTCACTTGGGCACTTTAATCGGCCTCAGTCCTGTGGGCCCTGAGTCCCAGATCCGCTACTCCATA
ACCAGCATGCCCACCATCACCAGTAACTATATATCCCTAGATATCGGAGCCATTCTCTCTCTTCTTGGCA
AACCCATCCTCCTGCCTATGCATGGTGCTCACCCCTTTGTGTTGCCATGGCCTTTGGGTGATGCAGGAGC
CATGGCAACTGTGGGGCTCTCCCAGCACCTGTTTGACTGTGCCCTCCTGATGCTTCAGAAGGCTGGCTCT
CTCAACCTGGAAATCACAGGGCAGCTGAATTCGAAGAACAATCCTCTGAACACCTCTGTGCTGGGCCAGC
TCATCCCTGAGGTGGCTCACCTGTTCCCTGAGCCTACACCACTGGTACTCAAGGTGCAGCTGGGTGCCAC
ACCCGTGGTCACTCTCCACACCAGCAACTCCACTCTCCAGCTGCAGCCCTTGGTGGAGGTCTTTGCTGCA
CCCTCGAACTTAGCCTTGCAGTTCCTTTTCTCCCTGGATGTGATGGTGAACCTGGACCTTCAGCTCTCTG
TGTCCAAGGCGAAGCTTCGGGGGAGCACATCTCTGCTGGGGGGATTCCAGCTCTCTGTGGCCACCTCCAA
TGTGGGCTCTGTTGATATGGATCAAGTACTCACACTCATAAGCACCGTATTCCAGAAACCCCTGCTGGAT
CATCTCAATGCTCTCCTGGGCATGGGGGTTGTCCTCCCCAGGGTGCACAATCTACATTATGTCCACTCTG
AGGTCTTGGTCCGTGAGGGCTATGTTGTGGTATCCAGTGGACTTGCCTACCAGCACTGA

Translation (462 aa):
MARACSLGLLLLLLLLLRTVVTVSLPVIVVRLNKAALDYVSDIGKAPLQRALQVTISDFMDPSGEVLQST
RVQILDAHVPFFYLKFIAGFGVHLSAAANFTIKVFSVPEPMELVLPVDLLADVHVARDSIGTLVLSVPAC
SSIFSPAGMLDGSISTSQELLDRVQEHIKADLNNKLCLHVYGLVQDLNVHLGTLIGLSPVGPESQIRYSI
TSMPTITSNYISLDIGAILSLLGKPILLPMHGAHPFVLPWPLGDAGAMATVGLSQHLFDCALLMLQKAGS
LNLEITGQLNSKNNPLNTSVLGQLIPEVAHLFPEPTPLVLKVQLGATPVVTLHTSNSTLQLQPLVEVFAA
PSNLALQFLFSLDVMVNLDLQLSVSKAKLRGSTSLLGGFQLSVATSNVGSVDMDQVLTLISTVFQKPLLD
HLNALLGMGVVLPRVHNLHYVHSEVLVREGYVVVSSGLAYQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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