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Report for CCDS16875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16875.1 Public Mus musculus 2 Fam110a 23 108 98 CCDS HistoryNCBI Gene:73847Re-query CCDS DB by CCDS ID:16875.1Re-query CCDS DB by GeneID:73847See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16875.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062047.5 ENSMUSP00000053266.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062047.5Link to Ensembl Protein Viewer:ENSMUSP00000053266.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000062047Re-query CCDS DB by Protein ID:ENSMUSP00000053266
Original member Current member EBI ENSMUST00000109863.1 ENSMUSP00000105489.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109863.1Link to Ensembl Protein Viewer:ENSMUSP00000105489.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109863Re-query CCDS DB by Protein ID:ENSMUSP00000105489
Original member Current member EBI ENSMUST00000109864.7 ENSMUSP00000105490.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109864.7Link to Ensembl Protein Viewer:ENSMUSP00000105490.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109864Re-query CCDS DB by Protein ID:ENSMUSP00000105490
Original member Current member EBI ENSMUST00000109865.7 ENSMUSP00000105491.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109865.7Link to Ensembl Protein Viewer:ENSMUSP00000105491.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109865Re-query CCDS DB by Protein ID:ENSMUSP00000105491
Original member NCBI NM_001289150.1 NP_001276079.1 Updated not alive Link to Nucleotide Sequence:NM_001289150.1Link to Protein Sequence:NP_001276079.1Re-query CCDS DB by Nucleotide ID:NM_001289150Re-query CCDS DB by Protein ID:NP_001276079
Current member NCBI NM_001289150.2 NP_001276079.1 Accepted alive Link to Nucleotide Sequence:NM_001289150.2Link to Protein Sequence:NP_001276079.1Re-query CCDS DB by Nucleotide ID:NM_001289150Re-query CCDS DB by Protein ID:NP_001276079Link to BLAST:NP_001276079.1
Original member NCBI NM_001289151.1 NP_001276080.1 Updated not alive Link to Nucleotide Sequence:NM_001289151.1Link to Protein Sequence:NP_001276080.1Re-query CCDS DB by Nucleotide ID:NM_001289151Re-query CCDS DB by Protein ID:NP_001276080
Current member NCBI NM_001289151.2 NP_001276080.1 Accepted alive Link to Nucleotide Sequence:NM_001289151.2Link to Protein Sequence:NP_001276080.1Re-query CCDS DB by Nucleotide ID:NM_001289151Re-query CCDS DB by Protein ID:NP_001276080Link to BLAST:NP_001276080.1
Original member NCBI NM_028666.3 NP_082942.2 Updated not alive Link to Nucleotide Sequence:NM_028666.3Link to Protein Sequence:NP_082942.2Re-query CCDS DB by Nucleotide ID:NM_028666Re-query CCDS DB by Protein ID:NP_082942
Current member NCBI NM_028666.4 NP_082942.2 Accepted alive Link to Nucleotide Sequence:NM_028666.4Link to Protein Sequence:NP_082942.2Re-query CCDS DB by Nucleotide ID:NM_028666Re-query CCDS DB by Protein ID:NP_082942Link to BLAST:NP_082942.2
Original member NCBI NM_146127.3 NP_666239.1 Updated not alive Link to Nucleotide Sequence:NM_146127.3Link to Protein Sequence:NP_666239.1Re-query CCDS DB by Nucleotide ID:NM_146127Re-query CCDS DB by Protein ID:NP_666239
Current member NCBI NM_146127.4 NP_666239.1 Accepted alive Link to Nucleotide Sequence:NM_146127.4Link to Protein Sequence:NP_666239.1Re-query CCDS DB by Nucleotide ID:NM_146127Re-query CCDS DB by Protein ID:NP_666239Link to BLAST:NP_666239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276079.1 296 Q8R184 296 100% 0 0
NP_001276080.1 296 Q8R184 296 100% 0 0
NP_082942.2 296 Q8R184 296 100% 0 0
NP_666239.1 296 Q8R184 296 100% 0 0

Chromosomal Locations for CCDS 16875.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 151969958 151970848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGCCTGTGGATACGCTGAGCCCCGGAGCCCCCGCCACTCCCGCCCTACCTTTTCGCCTGAGAACCAAGG
TT
CCCGGCTACCTGCTACCAAGGCCAGCAGACGGGGGAGCCAGGAAACCGAGTGCTGTGGAACGCCTGGA
G
GCTGATAAGGCTAAGTACGTCAAGAGCCTGCGTGTGGCCAACACCCGCCAAGAGCCGGTGCAGCCCCCG
CTG
GTCAGACAGCCCCTCTTCAGCCCTGGTCCTCGCGGCCCAGTGCTCACACCCAGTCGCCGAGTCCTGC
CC
TGTTCTGGCCGCCGGCCCCAACTGGACCTCGACATCCTTAGCAGCCTCATCAACTTGTGTGATAGTCC
T
GTGTCCCCATCTGAGGCCAGCCGAACACCTGGAAGGCCAGAAGGATCTGCCCACAAGGTCCCACCAGCC
ACC
CCTCCTCGTCCGCCACCCAGTACTGTCGCGGTGCGCCGAGTGGACGTTCGTCCCTTGCCTGCTTCAC
CT
GCTCGGCCCTATCCATCACCTGGCACCACTACCACTTCCAGCCCCGGCCGGCCCCCTGGCCTGCAGCG
G
TCCAAGTCGGACTTGAGTGAGCGCTTTTCCAGGGCAGCAGCCGATCTTGAGCGCTTTTTTAACTTCTGT
GGC
CTGGACCCAGAGGAAGCGCGAGGATTGGGGGTGGCCCACTTAGCAAGGGCCAGCTCGGACATCGTGT
CT
CTAGCCGGGCCAAGTGCTGGACCTTGCAGCTCTGAAGGGGGCTGCTCACGCCGCAGCTCTGCTACAGT
G
GAAGAGCGGTCCCTGGATCGTGTCCCCTATGGGGTGTCTGTGATCGAGCGAAACGCTCGTGTGATCAAG
TGG
CTATATGGGTTGCGGCAGGCTCGTGACCCTCCCACCACTGAGGGTTAG


Translation (296 aa):
MPVDTLSPGAPATPALPFRLRTKVPGYLLPRPADGGARKPSAVERLEADKAKYVKSLRVANTRQEPVQPP
L
VRQPLFSPGPRGPVLTPSRRVLPCSGRRPQLDLDILSSLINLCDSPVSPSEASRTPGRPEGSAHKVPPA
T
PPRPPPSTVAVRRVDVRPLPASPARPYPSPGTTTTSSPGRPPGLQRSKSDLSERFSRAAADLERFFNFC
G
LDPEEARGLGVAHLARASSDIVSLAGPSAGPCSSEGGCSRRSSATVEERSLDRVPYGVSVIERNARVIK
W
LYGLRQARDPPTTEG




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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