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Report for CCDS16668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16668.1 Public Mus musculus 2 Bloc1s6 23 108 98 CCDS HistoryNCBI Gene:18457Re-query CCDS DB by CCDS ID:16668.1Re-query CCDS DB by GeneID:18457See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16668.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005954.8 ENSMUSP00000005954.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005954.8Link to Ensembl Protein Viewer:ENSMUSP00000005954.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000005954Re-query CCDS DB by Protein ID:ENSMUSP00000005954
Original member Current member NCBI NM_019788.3 NP_062762.1 Accepted alive Link to Nucleotide Sequence:NM_019788.3Link to Protein Sequence:NP_062762.1Re-query CCDS DB by Nucleotide ID:NM_019788Re-query CCDS DB by Protein ID:NP_062762Link to BLAST:NP_062762.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062762.1 172 Q9R0C0-1 172 100% 0 0

Chromosomal Locations for CCDS 16668.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 122738623 122738704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122742589 122742730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122744126 122744213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122746055 122746141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122746511 122746630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGAGTGTTCCTGAGCCACCGCCTCCAGACGGGGTCCTTACGGGGCCTTCCGACAGCCTGGAGGCCGGCG
AGCCCACGCCGGGCTTAAGCGACACGTCTCCAGATGAAGGACTGATAGAGGACTTCCCTGTGGACGATAG
AGCTGTAGAGCACTTGGTGGGAGGCCTGCTGTCCCACTACTTACCAGATCTGCAGAGGTCCAAGCGAGCA
CTCCAGGAACTCACACAGAACCAAGTTGTGTTACTAGATACACTGGAACAAGAGATTTCAAAATTTAAAG
AATGCCACTCCATGTTGGACATCAATGCTTTGTTCACAGAGGCGAAGCACTATCACGCCAAGCTGGTGAC
TATAAGGAAGGAGATGCTGCTGCTCCATGAGAAAACGTCCAAGTTGAAAAAAAGAGCACTGAAGCTGCAG
CAGAAGCGGCAGAGAGAAGAGCTGGAGAGGGAGCAGCAACGCGAAAAGGAATTTGAAAGAGAAAAGCAGC
TGACAGCCAAGCCAGCCAAGAGGACATGA

Translation (172 aa):
MSVPEPPPPDGVLTGPSDSLEAGEPTPGLSDTSPDEGLIEDFPVDDRAVEHLVGGLLSHYLPDLQRSKRA
LQELTQNQVVLLDTLEQEISKFKECHSMLDINALFTEAKHYHAKLVTIRKEMLLLHEKTSKLKKRALKLQ
QKRQREELEREQQREKEFEREKQLTAKPAKRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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