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Report for CCDS16588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16588.1 Public Mus musculus 2 Rpusd2 23 108 98 CCDS HistoryNCBI Gene:271842Re-query CCDS DB by CCDS ID:16588.1Re-query CCDS DB by GeneID:271842See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16588.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028796.1 ENSMUSP00000028796.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028796.1Link to Ensembl Protein Viewer:ENSMUSP00000028796.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000028796Re-query CCDS DB by Protein ID:ENSMUSP00000028796
Original member Current member NCBI NM_173450.3 NP_775626.1 Accepted alive Link to Nucleotide Sequence:NM_173450.3Link to Protein Sequence:NP_775626.1Re-query CCDS DB by Nucleotide ID:NM_173450Re-query CCDS DB by Protein ID:NP_775626Link to BLAST:NP_775626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775626.1 553 Q149F1 553 100% 0 0

Chromosomal Locations for CCDS 16588.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119034824 119035468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119036918 119037214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119038040 119038759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGTGGCGGGGTGTCCCGGGCTGCCTACGGGACATTGTGCAGTGGCAGGTGGCGCTCTGGTCCCACAGCT
TTGTCCGGACTTGGGGTAGCTGTGGGAAGGCGATGACTGAGGCACTGTCTGCGCAAGCCGAGGCAGCGGG
CGGGCTGAAGGCTTTGGTTCAGCCAAATGGAGATGCTGGTAGCAACACGAGCGGAGAGCCGCTCCTGGAG
CGCCTGGAGCCGGCGGCGGTAGGGAAGCAGGTCCCGGAGAGCGGGGACCAGGCCCAGGGAGGCGAAGGGC
AGCTCCCGAGCAACGGAGAGCAGACCCCAGCTCCAGTCGCCGACTCAGGCAAGAGGAAAAAGCGGAGGGG
CGCCACTGGGGAACGGGTCGTGCCGCCTCCGAAGAAACGGCGCACCGGGGTGAGCTTTAGCGATGAGCAC
TTCGCAGAGACTACCTACTACTTCGAGGGCGGCCTGCGCAAGGTGCGGCCCTATTACTTTGACTTCCAGA
CCTACTGTAAAGGTCGCTGGGTGGGCCGCAGCTTGTTGCACGTCTTCAGCACCGAGTTCCGATCCCAGCC
ACTGTCTTACTACGAGGCCGCTGTCCGGGCAGGACGCCTGCATCTCAACGAGGAACCAGTCCAGGACCTC
AGCATCGTGCTCAAGGACAATGATTTCTTGCGGAACACAGTGCACAGACATGAGCCACCAGTCACAGCAG
AGCCTATCCACCTGCTAGCTGAGAACAACGATGTGGTTGTTATAGACAAGCCGTCCTCCATTCCTGTGCA
CCCCTGTGGCCGCTTCCGACACAACACGGTCATCTTCATCCTAGGCAAGGAGCACCAACTGAAAGAGCTA
CACCCACTGCATCGGCTGGACCGCCTCACCTCAGGAGTGCTCATGTTTGCGAAGACAGCTGCAGTCTCGG
AGAAGATCCATGAGCAGGTTCGGGATCGGCAGCTGGAGAAGGAGTATGTATGCCGGGTTGCAGGGGAGTT
CCCTGACAAGGAGGTAATTTGTAAGGAACCCATCTTAGTGGTGTCTTACAAGGTAGGAGTGTGCCGTGTG
GATCCCCGGGGCAAGCCTTGTGAGACTGTGTTCCAGAGGCTGAGCTACAATGGCCGCTCCAGTGTGGTAC
AGTGCCGACCACTTACAGGTCGCACTCACCAGATCCGAGTCCACCTCCAATTCCTGGGCCACCCGATTCT
CAATGACCCCATCTACAATTCAACTGCCTGGGGTCCTTCTCGAGGCCAGGGTGGCCACATTCCAAAGACA
GACGAGGAACTGCTCCGAGACCTGGTTGCAGAACATCAGGCCAAAGAAAGCCTGAGTATGCTAGATCTCT
GTGAGAGTGACCTGACGCCAGGGCTCATAGACTCGACAGCTCCCTCTTCAGAGTTGGCTAAAGACAGCCT
GGAAGGGTTGGCTACAGCAGCCCAGAAGATAGATGGAATAGCTGAGGCAGCCCCTCAGCATCTGGACACA
CCAGAGAAGGCAGCTAAAGCAGATGTGACTCAAGAAACAGACCCGCTCTGTGCCGAGTGCCGAGTGTTGC
GACAGGATCCCTTGCCCCAGGATCTCGTAATGTTCCTGCATGCCCTCCGCTATAAAGGGCCAGACTTTGA
GTACGTCTCACCCATCCCAGCCTGGGCACGGGATGACTGGCAAGAAGACTGA

Translation (553 aa):
MWRGVPGCLRDIVQWQVALWSHSFVRTWGSCGKAMTEALSAQAEAAGGLKALVQPNGDAGSNTSGEPLLE
RLEPAAVGKQVPESGDQAQGGEGQLPSNGEQTPAPVADSGKRKKRRGATGERVVPPPKKRRTGVSFSDEH
FAETTYYFEGGLRKVRPYYFDFQTYCKGRWVGRSLLHVFSTEFRSQPLSYYEAAVRAGRLHLNEEPVQDL
SIVLKDNDFLRNTVHRHEPPVTAEPIHLLAENNDVVVIDKPSSIPVHPCGRFRHNTVIFILGKEHQLKEL
HPLHRLDRLTSGVLMFAKTAAVSEKIHEQVRDRQLEKEYVCRVAGEFPDKEVICKEPILVVSYKVGVCRV
DPRGKPCETVFQRLSYNGRSSVVQCRPLTGRTHQIRVHLQFLGHPILNDPIYNSTAWGPSRGQGGHIPKT
DEELLRDLVAEHQAKESLSMLDLCESDLTPGLIDSTAPSSELAKDSLEGLATAAQKIDGIAEAAPQHLDT
PEKAAKADVTQETDPLCAECRVLRQDPLPQDLVMFLHALRYKGPDFEYVSPIPAWARDDWQED


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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