NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16481.1 Public Mus musculus 2 Caprin1 23 108 98 CCDS HistoryNCBI Gene:53872Re-query CCDS DB by CCDS ID:16481.1Re-query CCDS DB by GeneID:53872See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16481.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028607.12 ENSMUSP00000028607.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028607.12Link to Ensembl Protein Viewer:ENSMUSP00000028607.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028607Re-query CCDS DB by Protein ID:ENSMUSP00000028607
Original member Current member EBI ENSMUST00000111147.7 ENSMUSP00000106777.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111147.7Link to Ensembl Protein Viewer:ENSMUSP00000106777.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111147Re-query CCDS DB by Protein ID:ENSMUSP00000106777
Original member NCBI NM_001111289.1 NP_001104759.1 Updated not alive Link to Nucleotide Sequence:NM_001111289.1Link to Protein Sequence:NP_001104759.1Re-query CCDS DB by Nucleotide ID:NM_001111289Re-query CCDS DB by Protein ID:NP_001104759
Current member NCBI NM_001111289.2 NP_001104759.1 Accepted alive Link to Nucleotide Sequence:NM_001111289.2Link to Protein Sequence:NP_001104759.1Re-query CCDS DB by Nucleotide ID:NM_001111289Re-query CCDS DB by Protein ID:NP_001104759Link to BLAST:NP_001104759.1
Original member NCBI NM_016739.3 NP_058019.2 Updated not alive Link to Nucleotide Sequence:NM_016739.3Link to Protein Sequence:NP_058019.2Re-query CCDS DB by Nucleotide ID:NM_016739Re-query CCDS DB by Protein ID:NP_058019
Current member NCBI NM_016739.4 NP_058019.2 Accepted alive Link to Nucleotide Sequence:NM_016739.4Link to Protein Sequence:NP_058019.2Re-query CCDS DB by Nucleotide ID:NM_016739Re-query CCDS DB by Protein ID:NP_058019Link to BLAST:NP_058019.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104759.1 707 Q60865 707 100% 0 0
NP_058019.2 707 Q60865 707 100% 0 0

Chromosomal Locations for CCDS 16481.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 103766799 103766863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103768406 103768469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103768803 103768903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103769435 103769629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103771697 103771847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103772669 103772818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103772974 103773084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103773734 103773795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103775417 103775525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103775610 103775765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103775934 103776020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103776105 103776157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103777963 103778100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103779164 103779246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103779333 103779571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103782956 103783042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103783143 103783205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103796731 103796940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGCCCTCGGCCACCAGCCACAGCGGAAGCGGCAGCAAATCGTCGGGACCGCCGCCGCCGTCCGGTTCCT
CCGGGAGTGAGGCGGCGGCCGGGGCAGCTGCGCCGGCTTCTCAGCATCCGGCAACCGGCACCGGCGCCGT
CCAGACCGAGGCCATGAAGCAGATTCTCGGCGTAATCGACAAGAAACTTCGGAACCTGGAGAAGAAAAAG
GGTAAACTTGATGATTACCAGGAACGAATGAATAAAGGGGAAAGGCTCAATCAAGACCAGCTGGATGCCG
TATCTAAGTACCAGGAAGTCACAAATAATTTGGAGTTTGCAAAGGAATTACAGAGGAGTTTCATGGCATT
AAGTCAAGATATTCAGAAAACAATAAAGAAGACAGCACGTCGGGAACAGCTTATGAGAGAAGAAGCAGAA
CAGAAGCGCTTAAAAACTGTACTTGAGTTACAGTATGTATTGGATAAGCTGGGAGATGATGATGTGAGAA
CAGATCTGAAACAAGGTTTGAGTGGAGTGCCAATATTGTCTGAGGAGGAGTTGTCATTGCTGGATGAGTT
CTACAAGCTCGTAGATCCTGAGCGTGACATGAGTTTAAGGTTAAATGAGCAGTATGAACATGCCTCAATT
CACTTGTGGGATTTGCTGGAAGGGAAAGAAAAGCCTGTGTGTGGAACAACCTATAAAGCTCTAAAGGAAA
TTGTTGAGCGTGTTTTCCAGTCAAACTACTTTGATAGCACTCACAATCATCAAAATGGGTTGTGTGAGGA
GGAAGAGGCGGCTTCAGCGCCCACAGTGGAGGACCAGGTAGCTGAAGCTGAACCTGAGCCAGCGGAAGAA
TACACAGAGCAAAGTGAGGTTGAATCAACAGAGTATGTCAATAGGCAGTTCATGGCAGAAACACAGTTCA
GCAGTGGTGAGAAGGAGCAAGTGGATGAGTGGACAGTTGAAACAGTTGAGGTTGTAAACTCACTCCAGCA
GCAACCTCAGGCTGCGTCCCCTTCAGTCCCAGAGCCCCACTCTTTGACTCCAGTGGCTCAGTCAGATCCA
CTTGTGAGAAGGCAGCGTGTACAAGATCTTATGGCACAAATGCAAGGGCCCTATAATTTCATACAGGATT
CAATGTTGGATTTTGAAAATCAGACGCTTGATCCTGCCATTGTATCCGCACAGCCTATGAACCCTACCCA
GAACATGGATATGCCTCAGCTGGTTTGCCCTCAGGTTCATTCTGAATCTAGACTTGCCCAATCTAATCAA
GTTCCTGTACAACCAGAAGCCACACAGGTTCCTTTGGTTTCATCCACAAGTGAGGGGTATACAGCATCTC
AGCCCTTGTACCAGCCATCTCATGCTACGGAGCAGCGGCCGCAGAAAGAGCCAATGGATCAGATTCAGGC
AACAATATCTTTGAATACAGACCAGACTACAGCATCCTCATCCCTTCCTGCTGCTTCTCAGCCTCAAGTG
TTCCAGGCTGGGACAAGTAAACCTTTGCACAGCAGTGGAATCAATGTAAATGCAGCTCCATTCCAGTCCA
TGCAAACGGTGTTCAATATGAATGCTCCAGTCCCTCCTGCTAATGAACCAGAAACGTTAAAACAACAGAG
TCAGTACCAGGCCACTTATAACCAGAGTTTTTCCAGTCAGCCTCACCAAGTGGAACAAACAGAGCTTCAA
CAAGACCAACTGCAAACGGTGGTTGGCACTTACCATGGATCCCAGGACCAGCCTCATCAAGTGCCTGGTA
ACCACCAGCAACCCCCACAGCAGAACACTGGCTTTCCACGTAGCAGTCAGCCTTATTACAACAGTCGTGG
GGTATCTCGAGGAGGGTCTCGTGGTGCCAGAGGCTTGATGAATGGATACAGGGGCCCTGCCAATGGATTT
AGAGGAGGATATGATGGTTACCGCCCTTCATTCTCGAACACTCCAAACAGTGGTTATTCACAGTCTCAGT
TCACTGCTCCCCGGGACTACTCTGGTTACCAGCGGGATGGATATCAGCAGAATTTCAAGCGAGGCTCTGG
GCAGAGTGGACCACGGGGAGCCCCACGAGGTCGTGGAGGGCCCCCAAGACCCAACAGAGGGATGCCGCAA
ATGAACACTCAGCAAGTGAATTAA

Translation (707 aa):
MPSATSHSGSGSKSSGPPPPSGSSGSEAAAGAAAPASQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKK
GKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAE
QKRLKTVLELQYVLDKLGDDDVRTDLKQGLSGVPILSEEELSLLDEFYKLVDPERDMSLRLNEQYEHASI
HLWDLLEGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVAEAEPEPAEE
YTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWTVETVEVVNSLQQQPQAASPSVPEPHSLTPVAQSDP
LVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPQVHSESRLAQSNQ
VPVQPEATQVPLVSSTSEGYTASQPLYQPSHATEQRPQKEPMDQIQATISLNTDQTTASSSLPAASQPQV
FQAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPANEPETLKQQSQYQATYNQSFSSQPHQVEQTELQ
QDQLQTVVGTYHGSQDQPHQVPGNHQQPPQQNTGFPRSSQPYYNSRGVSRGGSRGARGLMNGYRGPANGF
RGGYDGYRPSFSNTPNSGYSQSQFTAPRDYSGYQRDGYQQNFKRGSGQSGPRGAPRGRGGPPRPNRGMPQ
MNTQQVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH