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Report for CCDS16448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16448.1 Public Mus musculus 2 Slc35c1 23 108 98 CCDS HistoryNCBI Gene:228368Re-query CCDS DB by CCDS ID:16448.1Re-query CCDS DB by GeneID:228368See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16448.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067631.6 ENSMUSP00000063461.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067631.6Link to Ensembl Protein Viewer:ENSMUSP00000063461.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000067631Re-query CCDS DB by Protein ID:ENSMUSP00000063461
Original member Current member NCBI NM_211358.2 NP_997597.1 Accepted alive Link to Nucleotide Sequence:NM_211358.2Link to Protein Sequence:NP_997597.1Re-query CCDS DB by Nucleotide ID:NM_211358Re-query CCDS DB by Protein ID:NP_997597Link to BLAST:NP_997597.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997597.1 363 Q8BLX4 363 100% 0 0

Chromosomal Locations for CCDS 16448.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 92454215 92454774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92458667 92459198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGAACAGGGCGCCTCTGAAGCGGTCCAGGATCCTGCGCATGGCGCTGACTGGAGTCTCTGCTGTCTCCG
AGGAGTCAGAGAGCGGGAACAAGCCATTTCTGCTCCGGGCTCTGCAGATCGCGCTGGTGGTCTCTCTCTA
CTGGGTCACCTCCATTTCCATGGTATTCCTCAACAAGTACCTGCTGGACAGCCCCTCCCTGCAGCTGGAT
ACCCCCATTTTTGTCACCTTCTACCAATGCCTGGTGACCTCACTGCTGTGCAAGGGCCTCAGCACTCTGG
CCACCTGCTGCCCCGGCATGGTAGACTTCCCCACCCTAAACCTGGACCTCAAGGTGGCCCGAAGTGTGCT
GCCGCTGTCAGTGGTCTTTATCGGCATGATAACCTTCAATAACCTCTGCCTCAAGTACGTAGGGGTGCCC
TTCTACAACGTGGGACGCTCGCTCACCACCGTGTTCAACGTTCTTCTCTCCTACCTGCTGCTCAAACAGA
CCACTTCCTTCTATGCCCTGCTCACCTGCGGCGTCATCATTGGTGGTTTCTGGCTGGGTATAGACCAAGA
AGGAGCTGAGGGAACCTTGTCCCTGACGGGCACCATCTTCGGGGTGCTGGCCAGCCTCTGCGTCTCCCTC
AATGCCATCTATACCAAGAAGGTGCTCCCTGCAGTAGACCACAGTATCTGGCGCCTAACCTTCTATAACA
ATGTCAATGCCTGCGTGCTCTTCTTGCCCCTGATGATAGTGCTGGGCGAGCTCCGTGCCCTCCTGGCCTT
CACTCATCTGAGCAGTGCCCACTTCTGGCTCATGATGACGCTGGGTGGCCTGTTTGGCTTTGCCATCGGC
TATGTGACAGGACTGCAGATCAAATTCACCAGTCCCCTGACCCATAACGTGTCAGGCACGGCCAAGGCCT
GTGCACAGACAGTGCTGGCCGTGCTCTACTACGAAGAGATTAAGAGCTTCCTGTGGTGGACAAGCAACCT
GATGGTGCTGGGTGGCTCCTCCGCCTACACCTGGGTCAGGGGCTGGGAGATGCAGAAGACCCAGGAGGAC
CCCAGCTCCAAAGATGGTGAGAAGAGTGCTATCAGGGTGTGA

Translation (363 aa):
MNRAPLKRSRILRMALTGVSAVSEESESGNKPFLLRALQIALVVSLYWVTSISMVFLNKYLLDSPSLQLD
TPIFVTFYQCLVTSLLCKGLSTLATCCPGMVDFPTLNLDLKVARSVLPLSVVFIGMITFNNLCLKYVGVP
FYNVGRSLTTVFNVLLSYLLLKQTTSFYALLTCGVIIGGFWLGIDQEGAEGTLSLTGTIFGVLASLCVSL
NAIYTKKVLPAVDHSIWRLTFYNNVNACVLFLPLMIVLGELRALLAFTHLSSAHFWLMMTLGGLFGFAIG
YVTGLQIKFTSPLTHNVSGTAKACAQTVLAVLYYEEIKSFLWWTSNLMVLGGSSAYTWVRGWEMQKTQED
PSSKDGEKSAIRV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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