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Report for CCDS16058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16058.1 Public Mus musculus 2 Cd302 23 108 98 CCDS HistoryNCBI Gene:66205Re-query CCDS DB by CCDS ID:16058.1Re-query CCDS DB by GeneID:66205See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028356.8 ENSMUSP00000028356.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028356.8Link to Ensembl Protein Viewer:ENSMUSP00000028356.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028356Re-query CCDS DB by Protein ID:ENSMUSP00000028356
Original member Current member NCBI NM_025422.4 NP_079698.2 Accepted alive Link to Nucleotide Sequence:NM_025422.4Link to Protein Sequence:NP_079698.2Re-query CCDS DB by Nucleotide ID:NM_025422Re-query CCDS DB by Protein ID:NP_079698Link to BLAST:NP_079698.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079698.2 219 Q9DCG2-2 219 100% 0 0

Chromosomal Locations for CCDS 16058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 60252292 60252491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60257033 60257203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60257883 60257999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60272102 60272212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60284060 60284120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGCCCCACGCAGCGCTGTCCTCGCTCGTGCTGCTGAGCCTCGCCACTGCCATCGTCGCCGACTGTCCTT
CATCTACCTGGGTCCAGTTCCAAGGCAGCTGTTATGCTTTTCTTCAAGTAACCATCAATGTGGAAAACAT
AGAGGATGTCAGAAAACAGTGCACTGACCACGGGGCAGACATGGTAAGCATACACAATGAAGAGGAAAAC
GCGTTTATACTGGACACTTTGCAAAAGCGATGGAAGGGTCCAGATGATCTCCTGCTAGGCATGTTCTATG
ACACTGATGATGCAACTTTCAAGTGGTATGATCATTCAAATATGACATTCGACAAGTGGGCAGATCAAGA
TGGTGAGGACCTAGTTGATACCTGTGGTTTTCTGTACACCAAGACAGGTGAATGGAGAAAAGGGGATTGT
GAAATCTCTTCTGTGGAGGGAACACTTTGCAAAGCAGCAAATAACCACATTTTAATATCGACTCTGGTGA
TCGCTAGCACAGTAACTCTGGCAGTTTTGGGAGCGATCATTTGGTTCCTCTATAGAAGAAACGCGCGCTC
TGGCTTCACCTCTTTTTCACCTGCACCACTGTCACCTTACAGTGATGGCTGTGCCCTGGTAGTTGCAGAA
GAAGATGAATATGCTGTTCAGCTGGACTAA

Translation (219 aa):
MPHAALSSLVLLSLATAIVADCPSSTWVQFQGSCYAFLQVTINVENIEDVRKQCTDHGADMVSIHNEEEN
AFILDTLQKRWKGPDDLLLGMFYDTDDATFKWYDHSNMTFDKWADQDGEDLVDTCGFLYTKTGEWRKGDC
EISSVEGTLCKAANNHILISTLVIASTVTLAVLGAIIWFLYRRNARSGFTSFSPAPLSPYSDGCALVVAE
EDEYAVQLD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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