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Report for CCDS15982.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15982.1 Public Mus musculus 2 Or1j1 23 108 98 CCDS HistoryNCBI Gene:18328Re-query CCDS DB by CCDS ID:15982.1Re-query CCDS DB by GeneID:18328See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15982.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100151.1 ENSMUSP00000097728.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100151.1Link to Ensembl Protein Viewer:ENSMUSP00000097728.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000100151Re-query CCDS DB by Protein ID:ENSMUSP00000097728
Original member Current member EBI ENSMUST00000213988.1 ENSMUSP00000149118.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213988.1Link to Ensembl Protein Viewer:ENSMUSP00000149118.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213988Re-query CCDS DB by Protein ID:ENSMUSP00000149118
Original member Current member NCBI NM_206903.1 NP_996786.1 Accepted alive Link to Nucleotide Sequence:NM_206903.1Link to Protein Sequence:NP_996786.1Re-query CCDS DB by Nucleotide ID:NM_206903Re-query CCDS DB by Protein ID:NP_996786Link to BLAST:NP_996786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996786.1 313 Q60879 313 100% 0 0

Chromosomal Locations for CCDS 15982.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 36812149 36813090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGAGACTCAAGAACCATAGCAGTGTGTCTGAGTTCCTTCTCCTGGGGTTTCCCATCAGACCAGAGCAGG
GAGGCATCTTCTTTTCTCTGTTCCTGGCCATGTACCTTATTACAGTGCTGGGGAACCTGCTCATCATCTT
GCTCATCAGGCTGGACTCTCATCTCCACACTCCCATGTACTTCTTTCTCAGCCATTTGGCCTTCACAGAC
ATTTCCTTTTCATCTGTCACTGTCCCGAAGATGTTAACAAAAGTTCAGAACCAGCCCATACCCATTACCT
ATGAGGAGTGTGTTTCACAGACATACTTCTTCATATTTTTTGCTGACTTGGACAGTTTCCTTATCACTTC
AATGGCCTATGACAGGTACATGGCCATCTGTCATCCTCTCCATTACATCACTATCATGAGTCAGAGCCGT
TGTGCCATGCTAGTAGCTGTGTCCTGGGTCATAGCTTCTGCTTGTGCTCTTTTGCACAGTCTCCTCCTAG
ACCAGCTTTCCTTCTGTGCTGACCACACTGTCCCACACTTCTTCTGTGACCTGGGTGCCCTGCTTAAGTT
GTCCTGTTCTGACACATCACTCAACCAACTGGTAATCTTCACAGCAGGTTTGGCCGCCATTATGCTTCCG
TTTCTATGCATCCTCATCTCTTATGGCCGTATTGGGTTCACCATCCTCCAGGTTCCCACAACCAAGGGTA
TCTGTAAAGCCTTGTCCACTTGCGGGTCCCATCTCTCAGTGGTGGCTCTCTATTATGGGTCAATTATTGG
TCTCTATTTTCTGCCTCCATCCAACAGTAAAATCAACAACAACATAGTTGCTTCAGTAATGTACACAGTA
GTCACTCCCATGTTGAACCCTTTCATTTACAGCCTGAGAAATAAAGACATGAAAGGGGCTTTAAAAAAAC
TCTTGAGTAAGAAGACAGAGTTTTCTAAGTGA

Translation (313 aa):
MRLKNHSSVSEFLLLGFPIRPEQGGIFFSLFLAMYLITVLGNLLIILLIRLDSHLHTPMYFFLSHLAFTD
ISFSSVTVPKMLTKVQNQPIPITYEECVSQTYFFIFFADLDSFLITSMAYDRYMAICHPLHYITIMSQSR
CAMLVAVSWVIASACALLHSLLLDQLSFCADHTVPHFFCDLGALLKLSCSDTSLNQLVIFTAGLAAIMLP
FLCILISYGRIGFTILQVPTTKGICKALSTCGSHLSVVALYYGSIIGLYFLPPSNSKINNNIVASVMYTV
VTPMLNPFIYSLRNKDMKGALKKLLSKKTEFSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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