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Report for CCDS15664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15664.1 Public Mus musculus 2 Ccdc3 23 108 98 CCDS HistoryNCBI Gene:74186Re-query CCDS DB by CCDS ID:15664.1Re-query CCDS DB by GeneID:74186See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15664.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027988.7 ENSMUSP00000027988.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027988.7Link to Ensembl Protein Viewer:ENSMUSP00000027988.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027988Re-query CCDS DB by Protein ID:ENSMUSP00000027988
Original member Current member NCBI NM_028804.1 NP_083080.1 Accepted alive Link to Nucleotide Sequence:NM_028804.1Link to Protein Sequence:NP_083080.1Re-query CCDS DB by Nucleotide ID:NM_028804Re-query CCDS DB by Protein ID:NP_083080Link to BLAST:NP_083080.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083080.1 273 Q9D6Y1 273 100% 0 0

Chromosomal Locations for CCDS 15664.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 5137934 5138307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5141231 5141405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5228916 5229188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGCCGCTCCCGCTGCTGCTCGCCGCGCTCTGCCTCGCCGCCTCCCCGGCGCCCGCGCGCGCCTGCCAGC
TGCCGTCGGAGTGGAGACCCTTGAGCGAAGGCTGCCGCGCCGAGCTAGCCGAGACCATCGTGTATGCCAA
GGTGCTGGCGCTGCACCCCGAGGTGCCTGGCCTCTACAACTACCTGCCGTGGCAGTACCAAGCTGGAGAG
GGAGGGCTCTTCTACTCCGCCGAGGTGGAGATGCTGTGTGACCAGGCGTGGGGCAGTATGTTGGAGGTGC
CCGCCGGCTCCCGGCTCAACCTTACTGGTCTGGGCTACTTCTCCTGCCACTCCCACACGGTGGTCCAGGA
CTACTCTTATTTCTTCTTTGTAAGGATGGATGAGAATTACAATCTCTTGCCACACGGAGTCAATTTCCAA
GATGCCATCTTTCCAGACACCCAGGAGAACAGAAGGATGTTTTCCAGCCTTTTCCAGTTTGCTAACTGTT
CCCAAGGGCAGCAGCTGACGACTTTCTCGAGTGACTGGGAGGTCCAGGAAGACAACAGGCTCATGTGCTC
CTCGGTGCAGAAGGCCCTGTTTGAGGAAGAGGACCATGTCAAGAAGCTGCAGCAGAAGGTGGCCACCCTG
GAGAAGCGGAACAGGCAGCTCCGAGAGCGGGTCAAGAAGGTCAAGAGGTCTCTGAGGCAGGCACGGAAGA
ACAGCCGCCACCTGGAGCTGGTGAACCAAAAACTCAATGAGAAGCTAGGGGCCTCCAGTGCTCAGCAGCA
CATTAACGCTCTGGGCCGGGAGCCCGTGCGTGCCCCCTATCTGCATGGGTAG

Translation (273 aa):
MPLPLLLAALCLAASPAPARACQLPSEWRPLSEGCRAELAETIVYAKVLALHPEVPGLYNYLPWQYQAGE
GGLFYSAEVEMLCDQAWGSMLEVPAGSRLNLTGLGYFSCHSHTVVQDYSYFFFVRMDENYNLLPHGVNFQ
DAIFPDTQENRRMFSSLFQFANCSQGQQLTTFSSDWEVQEDNRLMCSSVQKALFEEEDHVKKLQQKVATL
EKRNRQLRERVKKVKRSLRQARKNSRHLELVNQKLNEKLGASSAQQHINALGREPVRAPYLHG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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