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Report for CCDS15433.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15433.1 Public Mus musculus 1 Slc19a2 23 108 98 CCDS HistoryNCBI Gene:116914Re-query CCDS DB by CCDS ID:15433.1Re-query CCDS DB by GeneID:116914See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15433.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044021.11 ENSMUSP00000037561.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044021.11Link to Ensembl Protein Viewer:ENSMUSP00000037561.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000044021Re-query CCDS DB by Protein ID:ENSMUSP00000037561
Original member Current member NCBI NM_054087.3 NP_473428.1 Accepted alive Link to Nucleotide Sequence:NM_054087.3Link to Protein Sequence:NP_473428.1Re-query CCDS DB by Nucleotide ID:NM_054087Re-query CCDS DB by Protein ID:NP_473428Link to BLAST:NP_473428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473428.1 498 Q9EQN9-1 498 100% 0 0

Chromosomal Locations for CCDS 15433.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 164249253 164249456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164256747 164257349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164260792 164261017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164262047 164262239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164262620 164262761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164263390 164263518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGACGTGCCAGCCAGGGTGTCCAGACGAGCGGCGGCGGCGGCGGCCAGGATGCTTCTGCGTACTGCCC
GCGTCCCTCGCGAGTGCTGGTTCCTGCCGACCGCGCTGCTCTGCGCCTACGGCTTCTTCGCAAACCTCCG
GCCGTCGGAGCCGTTCCTCACGCCCTACCTTCTGGGACCCGACAAGAACTTGACCGAGAGACAGGTCTAC
AATGAAATTTATCCGGTGTGGACGTACTCTTACCTGCTGCTGCTGTTTCCCGTGTTCCTTGCCACAGACT
ACCTCCGGTACAAGCCTGTCATCCTGCTGCAGGGACTCAGCCTGATTGTGACGTGGTTCATGCTGCTCTA
TGCCCAGGGACTGCTGGCCATTCAGTTCTTGGAATTCTTCTACGGCATCGCCACAGCCACCGAAATCGCC
TACTACTCCTATATCTATACTGTGGTGGACCTGGGCATGTACCAGAAAGTCACAAGCTACTGTAGAAGTG
CCACCTTGGTGGGCTTTACAGTGGGCTCCGTCCTAGGGCAGATCCTCGTCTCCGTGGTGGGCTGGTCACT
GTTCAGCTTGAACGTCATCTCCCTCACCTGTGTTTCTGTGGCTTTTGCTGTGGCCTGGTTTCTGCCTATG
CCACAGAAGAGCCTCTTCTTTCACCACATTCCTTCCTCCTGTCATGGAGTGAACGGCCTCAAGGTACAAA
ACGGTGGCATCGTTACTGATACCCCAGCAGCTAACCATCTTCCTGGATGGGAGGACATTGAGTCAAAAAT
CCCTCTAAATTTAGATGAGCCTCCGGTGGAAGAACCGGAGGAGCCCAAGCCAGACCGGCTGCGGGTGTTC
AGAGTCCTGTGGAATGACTTCCTGATGTGTTATTCCTCCCGCCCTCTGCTCTGCTGGTCCGTGTGGTGGG
CCCTGTCCACCTGCGGCTATTTCCAAGTGGTGAACTACGCGCAGGGATTGTGGGAGAAGGTGATGCCTTC
TCAGAATGCTGACATCTACAATGGCGGTGTGGAGGCCGTTTCAACCTTGCTGGGTGCTAGTGCTGTGTTT
GCAGTTGGCTATATAAAGCTATCTTGGTCAACTTGGGGAGAAATGACGTTGTTCCTGTGTTCTCTCCTGA
TTGCTGCTGCAGTGTATGTCATGGACACTGTGCAGAGCATCTGGGTGTGCTATGCATCCTATGTTGTCTT
CAGAATCATCTACATGGTACTCATCACCATAGCAACTTTCCAGATTGCTGCGAACCTCAGCATGGAACGT
TACGCCCTTGTGTTCGGCGTGAACACCTTCATTGCCCTGGCATTGCAGACTCTGCTCACTCTGATTGTCG
TGGATGCCAGGGGCCTTGGCTTATGTATCACCACTCAGTTCCTGATTTACGCCAGTTACTTCGCAGCCAT
CTCTGTGGTTTTCCTGGCGAATGGCATAGTCAGTATTATAAAGAAATGCAGAAAGCAGGAAGATCCCAGC
TCCAGCCCCCAAGCCTCCACGTCCTAA

Translation (498 aa):
MDVPARVSRRAAAAAARMLLRTARVPRECWFLPTALLCAYGFFANLRPSEPFLTPYLLGPDKNLTERQVY
NEIYPVWTYSYLLLLFPVFLATDYLRYKPVILLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIA
YYSYIYTVVDLGMYQKVTSYCRSATLVGFTVGSVLGQILVSVVGWSLFSLNVISLTCVSVAFAVAWFLPM
PQKSLFFHHIPSSCHGVNGLKVQNGGIVTDTPAANHLPGWEDIESKIPLNLDEPPVEEPEEPKPDRLRVF
RVLWNDFLMCYSSRPLLCWSVWWALSTCGYFQVVNYAQGLWEKVMPSQNADIYNGGVEAVSTLLGASAVF
AVGYIKLSWSTWGEMTLFLCSLLIAAAVYVMDTVQSIWVCYASYVVFRIIYMVLITIATFQIAANLSMER
YALVFGVNTFIALALQTLLTLIVVDARGLGLCITTQFLIYASYFAAISVVFLANGIVSIIKKCRKQEDPS
SSPQASTS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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