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Report for CCDS49251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49251.1 Public Mus musculus 13 Phactr1 23 108 98 CCDS HistoryNCBI Gene:218194Re-query CCDS DB by CCDS ID:49251.1Re-query CCDS DB by GeneID:218194See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49251.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148891.7 ENSMUSP00000115228.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148891.7Link to Ensembl Protein Viewer:ENSMUSP00000115228.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148891Re-query CCDS DB by Protein ID:ENSMUSP00000115228
Original member Current member NCBI NM_001005740.1 NP_001005740.1 Accepted alive Link to Nucleotide Sequence:NM_001005740.1Link to Protein Sequence:NP_001005740.1Re-query CCDS DB by Nucleotide ID:NM_001005740Re-query CCDS DB by Protein ID:NP_001005740Link to BLAST:NP_001005740.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005740.1 642 Q2M3X8-3 642 100% 0 0

Chromosomal Locations for CCDS 49251.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 42709622 42709850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 42956617 42956781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43037450 43037530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43057179 43057346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43059571 43059777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43077655 43077976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43094749 43094996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43096650 43096806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43122999 43123054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43128138 43128199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43132920 43133060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43133927 43134003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43135174 43135189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGTGTGTGAGCCTCCTCCTTTCCCCTCCTCCCCCTTTCCGCCTCTCTCCCTCCCCCTCTCTCCATCTCC
TTCTCCTCTCAGCTCGCCGGGCGACCCTGCTCCTGCCTCCCACATTAATGGCGGCTTCTTCGGAGGATGA
CATAGACCGGCGGCCCATCAGAAGAGTCCGCTCCAAGAGCGACACGCCATATCTCGCAGAGGCCAGGATC
TCCTTTAACCTGGGGGCAGCCGAGGAAGTGGAGAGGCTGGCAGCCATGCGTTCCGACTCGCTGGTCCCAG
GTACGCACACCCCGCCCATCCGGAGGAGGAGTAAGTTTGCCAACCTGGGGAGGATTTTCAAACCCTGGAA
ATGGAGGAAGAAGAAAAGTGAAAAGTTCAAGCACACGTCAGCAGCTCTGGAAAGGAAGATTTCGATGAGG
CAGAGCAGAGAGGAGCTGATCAAGAGAGGGGTCTTGAAGGAGATCTACGATAAAGATGGAGAACTCTCTA
TATCAAATGAAGATGACTCCCTGGAGAACGGACAGTCCCTGAGCTCCAGCCAACTCTCTTTGCCTGCTCT
GTCGGAAATGGAGCCTGTCCCAATGCCCAGGGACCCATGCTCATATGAGGTGCTCCAAGCTTCAGACATT
ATGGATGGACCAGTGTCTGAAGAGAGTCCCTCTGCCAGTGAGTCTGGAGTCCTCCTGTCCCAAGATCCTT
CAGCCAAACCAGTTCTGTTCCTGCCCCCCAAAAAATCTGCTGCTTTCCCTGGAGACCATGAGGAGACCCC
AGTGAAACAGTTGTCCCTTCACAAGCAGCCCCCGGCCCTGCCTCCCAAACCCACTGCCCGGATTGCCAAC
CACTTAACAGATCCTGGCGCCCCTGTGAAATTGCCTTGTCTGCCAGTGAAACTGTCGCCTCCGCTACCTC
CAAAGAAAGTCCTGATCTGTATGCCTGTAGGGGGGCCAGAGCTCACTCTGGCATCCTATGCAGCCCAGAA
GAGCAGCCAGCAGGCCGTGGCCCAGCACCACCACACCGTCCTACCATCCCAGATGCAGCACCAGCTGCAG
TATGGCAGTCACGGCCAGCATCTCCCATCCTCCACCGGCACCTTGCCCATGCACCCCTCAGGCTGCAGGA
TGATCGACGAGCTGAACAAGACACTCGCCATGACGATGCAGAGGCTGGAAAGCTCCGAGCAACGAGTCCC
CTGTTCCACGTCTTACCACAGTTCTGGTTTGCACTCAAGCGACGGCATCACAAAAGCAGGACCCATGGGC
CTTCCGGAAATAAGACAAGTGCCAACTGTTGTGATTGAATGTGATGACAATAAGGAAAATGTGCCTCATG
AACCCGACTATGAAGACTCGCCCTGCCTGTATGGCCGGGAGGAGGAGGAAGAGGAGGAAGATGAAGATGA
TGACGCCTCTTTGTACACCAGCTCACTGGCCATGAAGGTGTGCAGGAAGGACTCCTTAGCCATCAAACTC
AGCAACAGGCCCTCTAAGCGAGAGCTAGAAGAAAAGAACATCCTCCCCAGACAGACGGATGAGGAACGGC
TGGAGCTCAGACAGCAGATTGGCACCAAGCTCACCAGGCGGCTGAGCCAGAGACCAACTGCAGAGGAACT
GGAACAGAGGAACATTTTGAAGCCTCGGAATGAACAAGAAGAACAGGAGGAGAAGCGGGAAATCAAGAGG
AGGCTGACTCGCAAGCTCAGCCAAAGGCCCACAGTGGAAGAACTCCGGGAGAGGAAGATCCTTATCCGCT
TCAGTGACTACGTGGAAGTGGCAGATGCCCAAGACTATGACCGAAGGGCAGACAAGCCATGGACCCGCCT
CACCGCTGCAGACAAAGCTGCCATTCGGAAGGAACTCAATGAGTTTAAAAGTACCGAGATGGAAGTCCAC
GAGTTAAGTAGACACTTAACCAGGTTTCATCGACCTTAA

Translation (642 aa):
MCVSLLLSPPPPFRLSPSPSLHLLLLSARRATLLLPPTLMAASSEDDIDRRPIRRVRSKSDTPYLAEARI
SFNLGAAEEVERLAAMRSDSLVPGTHTPPIRRRSKFANLGRIFKPWKWRKKKSEKFKHTSAALERKISMR
QSREELIKRGVLKEIYDKDGELSISNEDDSLENGQSLSSSQLSLPALSEMEPVPMPRDPCSYEVLQASDI
MDGPVSEESPSASESGVLLSQDPSAKPVLFLPPKKSAAFPGDHEETPVKQLSLHKQPPALPPKPTARIAN
HLTDPGAPVKLPCLPVKLSPPLPPKKVLICMPVGGPELTLASYAAQKSSQQAVAQHHHTVLPSQMQHQLQ
YGSHGQHLPSSTGTLPMHPSGCRMIDELNKTLAMTMQRLESSEQRVPCSTSYHSSGLHSSDGITKAGPMG
LPEIRQVPTVVIECDDNKENVPHEPDYEDSPCLYGREEEEEEEDEDDDASLYTSSLAMKVCRKDSLAIKL
SNRPSKRELEEKNILPRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQEEQEEKREIKR
RLTRKLSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEFKSTEMEVH
ELSRHLTRFHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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