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Report for CCDS48223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48223.1 Public Mus musculus 1 Stau2 23 108 98 CCDS HistoryNCBI Gene:29819Re-query CCDS DB by CCDS ID:48223.1Re-query CCDS DB by GeneID:29819See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48223.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027052.12 ENSMUSP00000027052.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027052.12Link to Ensembl Protein Viewer:ENSMUSP00000027052.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027052Re-query CCDS DB by Protein ID:ENSMUSP00000027052
Original member Current member EBI ENSMUST00000162627.7 ENSMUSP00000123781.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162627.7Link to Ensembl Protein Viewer:ENSMUSP00000123781.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162627Re-query CCDS DB by Protein ID:ENSMUSP00000123781
Original member Current member EBI ENSMUST00000162435.7 ENSMUSP00000123827.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162435.7Link to Ensembl Protein Viewer:ENSMUSP00000123827.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162435Re-query CCDS DB by Protein ID:ENSMUSP00000123827
Original member Current member NCBI NM_001111272.1 NP_001104742.1 Accepted alive Link to Nucleotide Sequence:NM_001111272.1Link to Protein Sequence:NP_001104742.1Re-query CCDS DB by Nucleotide ID:NM_001111272Re-query CCDS DB by Protein ID:NP_001104742Link to BLAST:NP_001104742.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104742.1 538 Q8CJ67-2 538 100% 0 0

Chromosomal Locations for CCDS 48223.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16229773 16229866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16231003 16231091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16345704 16346011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16366079 16366139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16369755 16369886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16374674 16374811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16389821 16390033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16392517 16392624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16394051 16394210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16440323 16440458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16463035 16463194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16509342 16509359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGCTTCAGATAAATCAGATGTTTTCGGTGCAGCTGAGTCTTGGCGAGCAGACATGGGAATCCGAAGGGA
GCAGTATAAAGAAGGCCCAACAAGCTGTTGCTAACAAAGCTTTGACTGAATCTACGCTTCCCAAACCAGT
TCAGAAACCACCTAAAAGTAATGTCAATAATAACCCAGGTAGTATAACTCCAACTGTGGAACTGAATGGG
CTCGCTATGAAAAGGGGAGAGCCTGCCATCTACAGGCCACTAGATCCAAAGCCATTCCCAAATTATAGAG
CTAACTACAACTTCCGGGGCATGTACAATCAGAGGTATCATTGCCCAATGCCCAAGATCTTTTATGTTCA
GTTAACTGTAGGAAATAATGAATTCTTTGGTGAAGGGAAGACTCGACAAGCTGCCAGACACAATGCTGCG
ATGAAAGCGCTTCAAGCCCTACAGAATGAGCCAATTCCAGAAAAGTCTCCCCAGAATGGTGAATCAGGAA
AAGAAATGGATGACGATAAAGATGCAAATAAATCTGAAATAAGCTTAGTGTTTGAGATTGCGCTGAAGAG
AAATATGCCTGTCAGTTTTGAGGTTATTAAAGAAAGTGGACCACCACATATGAAGAGTTTTGTAACTCGG
GTGTCAGTGGGAGAATTTTCTGCAGAAGGAGAGGGAAATAGCAAAAAACTCTCCAAGAAGCGTGCCGCAA
CCACTGTCTTACAGGAGCTTAAAAAACTCCCACCTCTTCCTGTGGTAGAGAAGCCAAAACTATTTTTTAA
AAAACGCCCTAAAACAATAGTAAAGGCTGGACCCGACTATGGTCAAGGAATGAACCCCATTAGCCGCCTG
GCTCAGATCCAGCAAGCCAGAAAGGAAAAGGAGCCTGATTACATCCTACTCTCAGAACGAGGAATGCCTC
GCCGTCGAGAGTTCGTAATGCAGGTCAAGGTAGGCAATGAAGTTGCGACTGGAACAGGACCCAATAAAAA
GATAGCCAAAAAAAATGCTGCTGAAGCAATGCTGTTACAGCTTGGCTATAAAGCGTCCACCAGTCTTCAG
GATCCGCTCGACAAGACAGGTGAAAACAAAGGATGGAGTGGTCCAAAGCCTGGGTTTCCTGAACCAACAA
ATAACACTCCAAAAGGAATTCTTCATCTTTCTCCTGATGTTTATCAAGAGATGGAAGCTAGCCGCCACAG
AGTGACCTCTGGCACAACTCTAAGCTACTTATCTCCCAAAGATATGAACCAACCTTCAAGCTCTTTCTTC
AGTGTGTCTCCCTCATCAACTAGTTCAGCCACAGTTGCCAGGGAACTCCTTATGAATGGAACATCTCCTA
CTGCTGAAGCCATAGGTTTAAAAGGAAGTTCTCCTACTTCCCCTTGTTCTTCAGTACAGCCTTCAAAACA
ACTGGAATATTTAGCAAGGATTCAAGGCTTTCAGGCAGCCTTAAGTGCCTTGAAACAGTTTTCTGAACAA
GGACTGGAATCAATTGATGGGGCAGTGAATGTTGAAAAGGGTTCTCTTGAAAAACAAGCCAAGCATCTGC
GGGAGAAAGCAGACAATAACCAGGCGAAGCCGGCCTCCATCTCTCAGGACTGCAAGAAATCAAAGTCGGC
CATCTAG

Translation (538 aa):
MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNG
LAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA
MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTR
VSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRL
AQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQ
DPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFF
SVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQAALSALKQFSEQ
GLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASISQDCKKSKSAI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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